Microbial Physiology



» Links
Databases, Programs and Tools
Biological Software Softwarelinks at the Institut Pasteur
BLAST-N DNA alignments
BLAST-P Protein alignments
ClustalW2 Multiple Sequence Alignment
Dali Server Comparing protein structures in 3D
EBI Services Services of the European Bioinformatics Institute
EDS Electron Density Server at Uppsala University
Expasy Expert Protein Analysis System
I-TASSER Protein Structure and Function Predictions
NCBI National Center for Biotechnology Information
NEB cutter V2.0 ORF and resiction enzyme cutting site identification
PDB Protein Data Bank (experimentally-determined structures of proteins)
pDRAW32 DNA analysis software
PEDANT 3 database Protein Extraction, Description and Analysis Tool
Pfam Protein families database of alignments and HMMs
Prosite Database of Protein families and Domains
ProtParam computation of various physical and chemical parameters for a given protein
PubMed U.S. National Library of Medicine
SignalP 3.0 Server Prediction of presence and location of signal peptide cleavage sites
TMHMM Server v. 2.0 Prediction of transmembrane helices in proteins
TOPCONS Consensus prediction of membrane protein topology
WebLogo Create Sequence Logos
Zdock Fast Fourier Transform based protein docking program
Updated 12.12.2013

Department of Biology
© Steven Wuttge
.: Microbial Physiology - Philippstr. 13 - 10115 Berlin :.