December 2017
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17th International Workshop on Bioinformatics and Systems Biology

 

 Sunday, 23 July 2017

 

 

Location:                                       Berlin Medical Historical Museum of the Charité /Lecture Hall Ruin,
                 Charitéplatz  (on Charité Campus, Virchowweg 16) , D 10117 Berlin

 

 

 

16:00 – 18:00

Registration and Coffee

16:30 – 17:30

Guided Tour through the Medical Historical Museum of the Charité

18:00 – 18:10

Edda Klipp, Humboldt University Berlin (Germany)
Welcome Address

18:10 – 19:00

Nikolaus Rajewsky, MDC Berlin
OPENING LECTURE “
From knocking out circular RNAs in mouse to single cell sequencing of lineages and complex tissues”

19:00 – 20:00

Reception / 2nd Guided Museum Tour

 

 


Monday, 24 July 2017

 

Location: Humboldt Graduate School, “Festsaal”, 2nd floor, Luisenstraße 56, 10115  Berlin

 

 

Session Chair: Ekaterina Eroshok              Technical help: Johannes Eckstein

09:00 – 09:25

Torsten Gross (HU Berlin)
A simple response logic robustly identifies network topologies

09:30 – 09:55

Yu Bao
A novel algorithm for the analysis of critical and redundant vertices

10:00 – 10:25

Zeba Sultana
Modelling the impact of  double X-dosage on signalling pathways implicated in pluripotency”

 

10:30

Coffee Break

 

 

 

Session Chair: Patrick Pett                           Technical  help: Andrea Auconi

11:00 – 11:25

Anna Lena Wölke
Selecting compounds against fibrosis based on gene expression data

11:30 – 11:55

Hiroki Konishi
Predicting antigen-specific immunoglobulins from three-dimensional structures of proteins using convolutional neural networks

12:00 – 12:25

Elmutaz M. Shaikho
SNP-based Classification of Sickle Cell Anemia HBB Haplotypes

 

 

12:30

Lunch Break

 

 

Session Chair: Verena Mutzel                      Technical help: Julia Schlichting

14:00 – 14:25

Asija Diag
A spatially resolved RNA map for the Caenorhabditis elegans germline

14:30 – 14:55

Yanze LI
“Comparison of giant virus diversity across ecosystems”

 

15:30 – 18:00

Coffee Break  with Poster Session  and
Best Poster Award

 


Tuesday, 25 July 2017

 

Chair: Asija Diag                                             Technical help: Daniel Schwabe

09:00 – 09:25

Elizabeth Becker
A Bronchial Airway Gene Expression Signature is Associated with Future Decline in Lung Function

09:30 – 09:55

Andrea Auconi
Causal influence and irreversibility

10:00 – 10:25

Abhishek Upadhyay
“Circadian clock and mathematical modeling of the filamentous fungi Neurospora”

 

10:30

Coffee break

 

 

Chair: Torsten Gross                                     Technical help: Mareike Simon

11:00 - 11:25

Junmin Wang
Modeling Genetic Circuit Behavior in Transiently Transfected Mammalian Cells

11:30 – 11:55

Patrick Pett
Circadian metabolism in mouse liver

12:00 – 12:25

Takuya Moriyama
“OHVarfinDer: Bayesian mutation calling method utilizing both paired-end overlapping and heterozygous SNPs”

 

12:30

Lunch break

 

 

Chair: Zeba Sultana                                        Technical help: Orsalia Hazapis

14:00 – 14:25

Marjan Faizi
A minimal model for cyanobacterial resource allocation

14:30 – 14:55

Alan Pacheco
Costless metabolic byproduct exchange contributes to microbial community diversity

15:00 – 15:45

INVITED LECTURE: Gašper Tkačik (IST Austria)
“Optimal decoding of cellular identities in a genetic network

 

19:00 – 22:00

Boat trip on the Spree River with dinner

 


Wednesday, 26 July 2017

 

Chair: Andrea Auconi                                    Technical help: Ekaterina Eroshok

09:00 – 09:45

INVITED LECTURE: Peter Swain (Univ. of Edinburgh)
The organization of information in the response of yeast to stress

09:50 – 10:15

Shuto Hayashi
Whole genome sequence-based analysis of HLA genes with Bayesian statistical model

10:20 – 10:45

Verena Mutzel
Establishment and maintenance of two opposing transcriptional states during random X-chromsome inactivation

 

10:50

Coffee break

 

Chair: Marjan Faizi                                         Technical help: Torsten Gross

11:10 - 11:35

Marta del Olmo Somolinos
Analysis of the interaction between redox oscillations and the canonical circadian clock

11:40 – 12:05

Johannes Eckstein
Bile-salt dependency of canalicular lipid secretion

12:10 – 12:35

Guoyu Wu
“Investigating TGFβ regulated cell proliferation decisions in single cells”

 

12:40

Lunch break

 

Chair: Johannes Eckstein                  Technical help: Patrick Pett

14:00 – 14:25

 

Orsalia Hazapis
The role of RNA secondary structure in post-transcriptional regulation

 

14:30 – 14:55

David Bray
“Dissecting the collaborative function of lineage-determining transcription factors in enhancer selection

 

15:00 – 15:25

 

15:30 – 16:15

Julia Katharina Schlichting
START model parametrization using count and time series data”

Jan Baumbach (Univ. of Southern Denmark, Odense)
INVITED LECTURE:
Systems Medicine - Network-Enhanced Disease Profiling”

16:20

Final remarks

19:00

Workshopdinner at Umspannwerk Ost

 


Student-led Workshops: Computer courses / tutorials

Invalidenstr. 42, Biophysics building (Mittelbau), Computer pool &  Rooms 312/312a 

 

Thursday, 27 July 2017

 

09:00 – 12:00

Jesper Romers

RXNCON - Session 1

Lunch

13:30 – 16:30

 

Jesper Romers

RXNCON - Session 2

 

 

Friday, 28 July 2017

Invalidenstr. 42, Biophysics building (Mittelbau) Computer pool &  Rooms 312/312a 


 

Session A:

09:00 – 12:00

 

Elmutaz Shaikho,  Junmin Wang (Boston University)

Modelling spatio-temporal behaviour gene circuits

 

Session B:

09:00 – 10:30

 
10:45 - 11:30

Torsten Gross

Hands-on network reconstruction


Ekatarina Eroshok

How is RNA-seq data generated in the lab


Lunch

 

13:30 -15:00

 

15:00 -16:00

 

16:00-17:00

Patrick Pett

Rhythm analysis in dynamical systems

Yanze Li

GenomeNet: Online tools and databases of bioinformatics

Yu Bao

An overview of KEGG: a database of genome and pathways

 

 

News

Next CSB seminar

December 07, 2017 with
Jana Wolf (MDC Berlin)

 

 

 

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