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Thursday, April 12
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17:45–18:15
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Registration / Coffee Break
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18:15–18:20
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Opening
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Session Chair: Willi Gottstein
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18:20–19:00
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Ralf Steuer
“Photosynthesis and Phototrophic Growth: Modelling Life on Earth and elsewhere”
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19:00–19:25
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Aljoscha Palinkas
“Regulation of metabolic networks in stoichiometric models”
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19:25–19:50
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Marvin Jens
“Aspects of post-transcriptional gene regulation”
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Registration / Free time
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Friday, April 13
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Session Chair: Nikolai Hecker
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09:00–09:15
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Mahsa Ghanbari
“Reconstruction of Gene Regulatory Networks from Gene Expression Data”
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09:15–09:30
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Friedemann Uschner
“Information Processing in Cellular Signaling”
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09:30–09:55
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Jan Zacharias
“Decoy Generation for Protein-Protein Docking”
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09:55–10:20
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Gerrit Korff
“New benchmark database for protein docking”
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Coffee Break
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Session Chair: Aljoscha Palinkas
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10:40–11:20
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Marcus Krantz
“A framework for mapping, visualisation and automatic model creation of signal transduction networks”
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11:20–11:45
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Juliane Zimmermann
“Modeling Cell Motility”
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11:45–12:10
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Anna Lena Wölke
“Understanding the Binding Properties of Selectins from Electrostatic Energy Calculations”
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12:10–12:35
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Joachim von Eichborn
“Polypharmacology of Drugs: A Molecular Analysis”
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Lunch break
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Session Chair: Friedemann Uschner
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14:30–14:45
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Alexandra Iovkova
“The energy metabolism of hepatoma cells compared to hepatocytes”
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14:45–15:00
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Christin Wallstab
“Mathematical modeling of the dynamics of lipid droplets in hepatocytes”
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15:00–15:25
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Nikolai Hecker
“Identification of differentially regulated miRNA-mRNA interactions based on the classification of expression data”
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15:25–15:50
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Judith Wodke
“In Silico Analysis of Mycoplasma pneumoniae metabolism”
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15:50–16:15
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Marvin Schulz
“Retrieval and alignment of computational models based on semantic annotations”
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Coffee break
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Session Chair: Gerrit Korff
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16:35–17:00
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Sarah Lück
“Rhythmic protein level modulated by rhythmic degradation”
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17:00–17:25
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Gregor Mönke
“Hierarchic Stochastic Modelling of Ca(2+) Dynamics”
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17:25–17:50
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Wolfgang Giese
“Spatial dynamics of a system of coupled glycolytic oscillators in interacting cells”
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17:50–18:15
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Dinto Jose
“Logical modeling and structural analysis of NF-kappaB signaling pathway”
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18:15–18:40
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Orianne Mazemondet
“Osmotic stress in yeast: the role of glycolysis side branches”
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Saturday, April 14
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Session Chair: Alexandra Iovkova
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09:00–09:25
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Mayumi Kamada
“Prediction of protein residue contacts based on residues coevolution using probabilistic model”
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09:25–09:50
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Uwe Benary
“Investigating the beta-TrCP dependent cross-talk between the Wnt/beta-catenin and TNF/NF-kappaB signalling pathway”
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09:50–10:15
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Matthias Reis
“Regulation of the yeast cell cycle studied by high-throughput microscopy”
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10:15–10:40
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Willi Gottstein
“The temporal coordination of metabolism”
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Coffee break
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Session Chair: Mahsa Ghanbari
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11:00–11:40
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Dennis Diestler
“Statistical Thermodynamics of Colloidal Probe Microscopy of Polymer Brushes”
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11:40–12:05
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Thomas Spießer
“Size regulation is intrinsic to growing cell populations and not due to sensing or signalling”
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12:05–12:30
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Manuela Benary
“Activation and inhibition of human Interleukin 2 gene expression - a model for transcriptional regulation”
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12:30–13:55
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Matthias König
“Quantifying the Alterations in Human Hepatic Glucose Metabolism in T2DM”
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13:55
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Closing remarks
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Lunch / Island tour
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19:00
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Workshop dinner at Hotel Hitthim in Kloster
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