Teaching
Our group is engaged in the diploma, bachelor, and master study courses in biophysics. Each semester (in May and November) we offer
a 2-week course on "Mathematical modelling of biological systems" (focusing on cellular processes, self-organisation and evolution).
Lectures Summer semester - 2013
Übungen/Praktikum: Theoretische Biophysik/Theoretische Physik
Bachelor
Mondays - 08:15
Großer Seminarraum
Prof. Edda Klipp
Theoretische Biophysik: Claudia Back, Max Schelker
Theoretische Physik: Matthias Reis, Till Scharp
Vorlesung: Theoretische Biophysik
Bachelor
Mondays - 10:15
Großer Seminarraum
Dr. Clemens Kühn
Vorlesung: Theoretische Physik
Bachelor
Tuesdays - 08:15
Großer Seminarraum
Prof. Edda Klipp
Vorlesung: Systembiologie
Master
Mondays - 14:15
Großer Seminarraum
Prof. Edda Klipp
Vorlesung: Hefesystembiologie
Master
Wednesdays - 08:15
Großer Seminarraum
Dr. Marcus Krantz
Kurs: Theoretische Biophysik II - Systembiologie
Master
May 14 - 24, 2013
Großer Seminarraum
Prof. Edda Klipp
Vorbesprechung: April 29, 2013, 14:00, Inv 42, Neubau, SR
Oberseminar: Theoretische Biophysik
Master/PhD
Thursdays - 13:15
Großer Seminarraum
Prof. Edda Klipp
Lectures Winter semester - 2012/13
Vorlesung: Thermodynamik von Nichtgleichgewichtsprozessen
Bachelor
Mondays - 10:15
Großer Seminarraum
Prof. Edda Klipp
Vorlesung: Modelle zellulärer Prozesse
Bachelor
Thursdays - 8:15
Großer Seminarraum
Dr. Thomas Spießer
Kurs: Modulvertiefung Bph V1 - Theoretische Biophysik
Bachelor
20.11.2011 - 30.11.2012
Großer Seminarraum, Kleiner Seminarraum, Computerpool
Prof. Edda Klipp
Katharina Baum, Jose Dinto, François Guillaud, Alexander Hoffmann, Axel Kowald, Falko Krause, Clemens Kühn, Orianne Mazemondet, Ulrike Münzner, Magdalena Rother, Till, Scharp,
Katarzyna Tyc
Vorlesung: Elektrodynamik
Master
Mondays - 16:15
Großer Seminarraum
Prof. Edda Klipp
Wolfgang Giese, Björn Goldenbogen
Vorlesung: Statistische Physik
Master
Tuesdays - 08:15
Großer Seminarraum
Dr. Thomas Handorf
Katja Tummler, Friedemann Uschner
Übungen: Theoretische Physik
Master
Wednesdays - 08:15
Großer Seminarraum
Prof. Edda Klipp
Vorlesung: Quantenbiophysik und Molekulardynamik
Master
Fridays - 08:15
Großer Seminarraum
Dr. Roland Mitric
Oberseminar: Theoretische Biophysik
Master/PhD
Thursdays - 13:15
Großer Seminarraum
Prof. Edda Klipp
Lectures Summer semester - 2012
Übungen/Praktikum: Theoretische Biophysik/Theoretische Physik
Bachelor
Mondays - 08:15
Großer Seminarraum
Prof. Edda Klipp
Theoretische Biophysik: Katharina Albers, Katarzyna Tyc
Theoretische Physik: Margit Heiske, Friedemann Uschner
Vorlesung: Theoretische Biophysik
Bachelor
Mondays - 10:15
Großer Seminarraum
Prof. Edda Klipp
Vorlesung: Theoretische Physik
Bachelor
Tuesdays - 08:15
Großer Seminarraum
Prof. Edda Klipp
Vorlesung: Systembiologie
Master
Mondays - 14:15
Großer Seminarraum
Prof. Edda Klipp
Kurs: Theoretische Biophysik II - Systembiologie
Master
15.05. - 25.05.2012
Zeitplan
Großer Seminarraum
Prof. Edda Klipp
Vorbesprechung: 23.04.2012, 12:00, Inv 42, Neubau, SR
Katharina Albers, Christian Diener, Max Föttmann, François Guillaud, Thomas Handorf, Margit Heiske,
Marcus Krantz, Falko Krause, Orianne Mazemondet, Till Scharp, Marvin Schulz, Judith Wodke
Oberseminar: Theoretische Biophysik
Master/PhD
Thursdays - 13:15
Großer Seminarraum
Prof. Edda Klipp
Lectures Winter semester - 2011/12
Vorlesung/übungen: Thermodynamik von Nichtgleichgewichtsprozessen
Bachelor
Mondays - 10:15
Großer Seminarraum
Prof. Edda Klipp
Vorlesung/Übungen: Modelle zellulärer Prozesse
Bachelor
Thursdays - 8:15
Großer Seminarraum
Prof. Jana Wolf
Kurs: Modulvertiefung Bph V1 - Theoretische Biophysik
Bachelor
22.11.2011 - 02.12.2011
Großer Seminarraum, Kleiner Seminarraum, Computerpool
Prof. Edda Klipp
Wolfgang Giese, François Guillaud, Margit Heiske, Marta Hoffmann-Sommer, Bente Kofahl, Axel Kowald, Falko Krause,
Clemens Kühn, Orianne Mazemondet, Katarzyna Tyc
Vorlesung: Elektrodynamik
Master
Mondays - 16:15
Großer Seminarraum
Prof. Edda Klipp
Vorlesung: Statistische Physik
Master
Mondays - 08:15
Großer Seminarraum
Dr. Thomas Handorf
Übungen/Praktikum: Theoretische Physik
Master
Mondays - 08:15
Großer Seminarraum
Dr. Thomas Handorf
Vorlesung: Quantenbiophysik und Molekulardynamik
Master
Fridays - 08:15
Großer Seminarraum
Dr. Roland Mitric
Oberseminar: Theoretische Biophysik
Master
Thursdays - 13:15
Großer Seminarraum
Prof. Edda Klipp
Ringvorlesung: Cell Signalling
Wednesdays - 09:00
Charité Campus Mitte, Virchowweg 4, Paul Ehrlich Hörsaal
Lectures Summer semester - 2011
Übungen: Theoretische Biophysik/Theoretische Physik (im Wechesel)
Bachelor
Mondays - 08:15
Zentrallabor
Prof. Edda Klipp
Theoretische Biophysik: Timo Lubitz, Katarzyna Tyc
Theoretische Physik: Wolfgang Giese, Margit Heiske
Vorlesung: Theoretische Biophysik
Bachelor
Mondays - 10:15
Zentrallabor
Prof. Edda Klipp
Vorlesung: Theoretische Physik
Bachelor
Tuesdays - 08:15
Zentrallabor
Prof. Edda Klipp
Vorlesung: Systembiologie
Master
Mondays - 14:15
Zentrallabor
Prof. Edda Klipp
Kurs: Theoretische Biophysik II - Systembiologie
Master
17.05.2011 - 27.05.2011
Zentrallabor
Prof. Edda Klipp
Christian Diener, Samuelhe Drulhe, Marcus Krantz, Clemens Kühn, Timo Lubitz, Marvin Schulz,
Adriana Supady, Katarzyna Tyc,
Chritian Waltermann
Oberseminar: Theoretische Biophysik
Master, PhD
Thursdays - 13:15
Zentrallabor
Prof. Edda Klipp
Lectures Winter semester - 2010/11
Thermodynamik von Nichtgleichgewichtsprozessen
Bachelor
Mondays - 10:15
Zentrallabor
Prof. Edda Klipp
Modelle zellulärer Prozesse
Bachelor
Thursdays - 8:30
Zentrallabor
Prof. Jana Wolf
Elektrodynamik
Master
Mondays - 16:15
Seminarraum, 3rd floor
Prof. Edda Klipp
Statistische Physik
Master
Mondays - 08:15
Seminarraum, 3rd floor
Dr. Thomas Handorf
Quantenbiophysik und Molekulardynamik
Master
Fridays - 08:15
Zentrallabor
Dr. Roland Mitric
Oberseminar: Theoretische Biophysik
Thursdays - 13:15
Zentrallabor
Prof. Edda Klipp
Lectures Summer semester - 2010
Theoretische Biophysik
Bachelor
Mondays - 10:15
Zentrallabor
Exercises, every second Tuesday - 8:30
Seminarraum, 3rd floor
Prof. Edda Klipp
Theoretische Physik
Bachelor
Fridays - 10:15
Zentrallabor
Exercises, every second Tuesday - 8:30
Seminarraum, 3rd floor
Dr. Jana Schütze
Systembiologie
Master
Mondays - 14:15
Zentrallabor
Prof. Edda Klipp
Oberseminar: Theoretische Biophysik
Master
Wednesdays - 08:15
Zentrallabor
Prof. Edda Klipp
Lectures Winter semester - 2009/10
Thermodynamik von Nichtgleichgewichtsprozessen
Bachelor
Wednesdays - 8:30
Zentrallabor
Marvin Schulz
Modelle zellulärer Prozesse
Bachelor
Fridays - 8:30
Zentrallabor
Dr. Wolfram Liebermeister
Elektrodynamik
Master
Mondays - 10:15
Seminarraum, 3rd floor
Prof. Edda Klipp
Statistische Physik
Master
Mondays - 12:15
Seminarraum, 3rd floor
Dr. Szymon Stoma
Quantenbiophysik und Molekulardynamik
Master
Tuesdays - 12:15
Zentrallabor
Dr. Roland Mitric
Oberseminar: Theoretische Biophysik
Thursdays - 13:15
Zentrallabor
Prof. Edda Klipp
Lectures Summer semester - 2009
Theoretische Biophysik
Bachelor
Mondays - 10:15
Zentrallabor
Exercises, every second Tuesday 8:30
Seminarraum, 3rd floor
Prof. Edda Klipp
Theoretische Physik
Bachelor
Mondays - 8:15
Zentrallabor
Exercises, every second Tuesday - 8:30
Seminarraum, 3rd floor
Jana Schütze
Systembiologie
Master
Wednesdays - 8:30
Zentrallabor
Prof. Edda Klipp
Lectures Winter semester - 2008/09
Thermodynamik von Nichtgleichgewichtsprozessen
Wednesdays - 8:30
Zentrallabor
Simon Borger
Modelle zellulärer Prozesse
Fridays - 8:30
Zentrallabor
Dr. Jörg Schaber
Elektrodynamik
Mondays - 10:15
Seminarraum, 3. Etage
Prof. Edda Klipp
Statistische Physik
Mondays - 12:15
Seminarraum 3. Etage
Dr. Wolfram Liebermeister
Quantenbiophysik und Molekulardynamik
Tuesdays - 12:15
Zentrallabor
Dr. Roland Mitric
Oberseminar: Theoretische Biophysik
Thursdays - 13:15
Zentrallabor
Prof. Edda Klipp
Seminars
Unless otherwise specified, the seminars take place at 13:15
in the Biophysics Building, Invalidenstr. 42, Großer Seminarraum (room 312), 3rd floor.
2013
06.06.2013
Wolfgang Giese
30.05.2013
Sebastian Thieme
23.05.2013
Ulrike Münzner
16.05.2013
Max Flöttmann
02.05.2013
Gabriele Schreiber
25.04.2013
Stefan Homann
"Snfi1 pathway regulation"
18.04.2013
Orianne Mazemondet
"Trehalose and glycogen during yeast osmotic stress"
11.04.2013
Katharina Albers
"Systems Biology for the elucidation of pesticide mode of action"
04.04.2013
Blörn Goldenbogen
"Let It Flow — A Microfluidic device for single cell analysis of S. cerevisiae"
28.03.2013
"Whole cell model"
21.03.2013
Henrik Cordes
"E. coli on Low Carb Diet: Implementing synthetic metabolic pathways for growth and production"
07.03.2013
Fabio Baldissera
"A Control Theory Approach to Intervene in Biological Networks"
28.02.2013
Tomoya Mori
"A probabilistic Boolean modeling based on reactions and contingencies"
21.02.2013
Clemens Kühn
"Modeling Cell Cycle of Mycobacterium Tuberculosis"
14.02.2013
Friedemann Uschner
"Characterizing the transduction of a signal - A systems health check"
07.02.2013
Matthias Reis
"The problem of absolute protein quantification in fluorescence microscopy"
31.01.2013
Wolfgang Giese and S. Westerheide
"Modeling cell polarization in budding yeast and a finite element approach to simulate membrane-cytosol interactions"
24.01.2013
Thomas Handorf
"A Boolean model of cancer signaling"
17.01.2013
Samuel Drulhe
"FLISELab: a tool for ion fluxes measurement"
10.01.2013
Fabian Bindel
"C-myc and its influence on the central carbon metabolism"
2012
13.12.2012
Axel Kowald and François Guillaud
"Ageing, mitochondria and ROS: the GerontoMitoSys project"
11.12.2012
Aouefa Amoussauvi and Claudia Beck
"Translational and transcriptional dynamics of G1/S transition regulating genes in S.cerevisiae - An experimental and theoretical single cell study"
03.12.12 - 12:30
Thomas Rattei, Vienna University
"Bacterial protein secretion - Key factor in host-pathogen interactions"
29.11.2012
Marvin Schulz
"Systems biology methods in the identification of potential drug targets"
29.11.2012
Katja Tummler
"Ideas on model integration in metabolic studies"
15.11.2012
Till Scharp
"CellNetOptimizer: From prior knowledge to predictive models in early reprogramming"
08.11.2012
Katja Tummler, Orianne Mazemondet, and Friedemann Uschner
"Exploring the legendary secrets of the "(Un)-Parametrized Treasures" - The stunning tales of the adventurous DREAM-Team"
01.11.2012
Stephan Adler
"A modeling approach to explore G1 specificy in diverse cultures of S. cerevisiae"
30.10.2012
Rodrigo Baltanás
"Pheromone-induced morphogenesis activates the yeast HOG MAPK pathway improving osmoadaptation capacity"
read more ...
25.10.2012
Judith Wodke
"Organization and Integration of Large-scale Datasets for Designing a Metabolic Model and Re-annotating the Genome of Mycoplasma pneumoniae"
18.10.2012
Marcus Krantz
"Using the rxncon framework for iterative network definition, visualisation and modelling"
04.10.2012
Alexander Hoffmann
"A dynamical code to specify immune responses"
18.09.2012 - after our group meeting
Tracy Johnson
"A histone “tail”: Unexpected mechanisms of co-transcriptional RNA splicing"
13.09.2012 - 13:30
Matthias Bock - Defense of Master thesis
"Mitophagy in yeast, an autophagic process of intracellular organelle quality control"
02.08.2012
Abel Vertesy
"Pombe pheromone response"
26.07.2012
Falko Krause
"biographer.grid - A new layout algorithm for biochemical reaction network visualizations"
Ercan Kukroglu
"Bayesian Data Analysis: Numerical Methods, Markov Chain Monte Carlo et al."
19.07.2012
Katharina Albers
"How to defeat a Cereal Killer - finding drug targets in Magnaporthe grisea"
19.07.2012
Henrike Zschach - Defense of Bachelor thesis
"Dekodierung von Kalzium-Spike-Sequenzen"
12.07.2012
Friedemann Uschner
"Loud is the new Quiet: Noise and Information Transmission"
05.07.2012
Orianne Mazemondet
"Sweeter when stressed-out: yeast glycolysis during osmotic stress"
28.06.2012
François Guillaud
"Modelling the effects of ageing on the respiratory chain"
21.06.2012
Marvin Schulz
"Identifying drugs in optimal treatments"
14.06.2012
Marcus Krantz
"The rxncon project"
07.06.2012
Wolfgang Giese
"Modeling cell polarity in yeast"
31.05.2012
Thomas Handorf
"Modeling cancer signaling"
24.05.2012
Max Schelker
"Input estimation in dynamical systems & Epo-induced signaling in hematopoietic and tumor context"
10.05.2012
Matthias Reis
"Regulation of the yeast cell cycle studied by high-throughput microscopy"
03.05.2012
Adriana Supady - Defense of Master thesis
"Mathematical modeling of synthetic logic gates in S. cerevisiae"
26.04.2012
Matthias Bock
"biographer simulator - An easy tool for interactive model simulation"
Attention: new date: April 19, 2012
(12.04.2012)
Kararzyna Tyc
"A game theoretical approach to study host-pathogen interactions"
05.04.2012
Till Scharp
"A stochastic model of epigenetic dynamics in somatic cell reprogramming"
29.03.2012
Samuel Drulhe
"Thermodynamical modeling of transmembrane cation fluxes in yeast"
22.03.2012
Clemens Kühn
"Modeling cell cycle and growth of Mycobacterium tuberculosis"
15.03.2012
Margit Heiske
"Modelling the oxidative phosphorylation: hypoxia and supercomplexes"
08.03.2012
Arturo Blázquez Navarro
"ODE Models and Drug Target Search: The example of TGF-Beta"
01.03.2012
Friedemann Uschner
"Information Theory and Biology"
14.02.2012 - following the group meeting (Invalidenstr. 42, Großer Seminarraum)
André Dautcourt
"Modeling ROS production by respiratory chain complex I"
02.02.2012
Uwe Benary (MDC)
"Mathematical modelling suggests different functions of beta-TrCP isoforms in Wnt/beta-catenin signalling"
17.01.2012 - following the group meeting (Invalidenstr. 42, Großer Seminarraum)
Christian Diener
"Non-invasive quantification of extracellular communication in live yeast"
12.01.2012
François Guillaud
"From respiratory chain to ageing: the production of ROS"
05.01.2012
Judith Wodke
"A constraint-based metabolic model for M. pneumoniae - Final results"
2011
15.12.2011
Thomas Spießer
"Exploring mechanisms of size control and genomic duplication in Saccharomyces cerevisiae"
08.12.2011
Matteo Barberis
"An unexpected mechanism controlling chromatin silencing in yeast"
01.12.2011
Marcus Krantz
"State transformation for automatic model reduction"
24.11.2011
Katja Tummler
"Modelling of the Central Carbon Metabolism of Mycobacterium Tuberculosis"
17.11.2011
Till Scharp
"Motif Discovery in Pluripotency Related Boolean Networks"
10.11.2011
Falko Krause, Thomas Handorf, Marvin Schulz
"Network Visualization: Google Summer of Code Results"
03.11.2011
Jens Hahn
"Arsenate replacing phosphate in yeast glycolysis"
20.10.2011
Clemens Kühn
"Modeling of the mycobacterial cell cycle"
13.10.2011
Max Flöttmann
"Analysis of proteome data of virus and host in influenza infection"
06.10.2011
Samuel Drulhe
"Cation homeostasis"
29.09.2011
Katarzyna Tyc
"Modeling C. albicans interactions with its human host"
22.09.2011
Christian Waltermann
"Which factors are connected to dosage sensitivity in the budding yeast signaling system?"
15.09.2011
Matthias Reis
"Phycobilisome diffusion in cyanobacteria investigated by Fluorescence Lifetime Imaging Microscopy"
28.07.2011
Margit Heiske
"Modeling the respiratory chain"
08.07.11 - 15:00
Tatsuyo Shibata, Laboratories for Physical Biology, RIKEN Center for Developmental Biology,
Kobe (Japan)
"Inherent polarity and gradient sensing of the self-organized signaling system in chemotactic cells"
07.07.2011
József Bruck
"Hierarchic analysis revisited - (finite) Flux Difference Analysis applied to glycolytic enzymes"
05.07.2011 - 15:00
Wolfgang Giese
"Spatial sensing of mating pheromone gradients by Saccharomyces cerevisiae"
04.07.2011 - 17:00 (Invalidenstr. 42, Kleiner Seminarraum)
Associate Professor James Faeder, University of Pittsburgh
"Simulation methods for rule-based models of biochemical networks"
30.06.2011
Falko Krause, Marcus Krantz
"yeastmap - A software tool for mapping and modeling of large scale biological networks"
23.06.2011
Christian Waltermann
"An approach to information theoretical analysis of the High Osmolarity Glycerol (HOG) pathway in yeast"
16.06.2011
Marvin Schulz
"Identification of Potential Drug Targets in Kinetic Models: From Experimental Data to Drug Candidates"
09.06.2011
Martina Fröhlich
"Mathematical models of the regulation of membrane transport"
26.05.2011
Thomas Spießer
"Size homeostasis is an emergent property of growing and dividing yeast cells"
19.05.2011
Orianne Mazemondet
"Spatio-temporal dynamics of the Wnt/beta-catenin signaling pathway"
18.05.2011 - 17:00 (Chausseestr. 117, room 551, 5th floor)
Dr. Alejandro Colman-Lerner (Universidad de Buenos Aires)
"Mechanisms that regulate cell fate determination"
10.05.2011 - 14:30
Dr. François Guillaud
"Modelling the complex III ROS production: 2 quinones at the Qo site ? - Model enhancements"
29.04.2011 - 10:00
Dr. Roger Brent
"Signal and signal variation in single cells"
28.04.2011
Dr. Szymon Stoma
"Kinetic model verification in Systems Biology"
21.04.2011
Max Flöttmann
"Methods for modelling the core gene regulatory network of pluripotency"
17.03.2011
Gady Goldsobel
"How do multiple pathway branches team up in the yeast osmoadaptation? A modeling approch"
10.03.2011
Dr. Clemens Kühn and Helena Steinocher
"Modeling of cell cycle in Mycobacterium tuberculosis - introduction, first results, future perspectives"
04.03.2011 - 14:00 (Invalidenstr. 43, Seminarraum ITB)
Natalie Stanford
"Developing a minimal data approach to large-scale kinetic model construction in Sacchromyces cerevisiae"
24.02.2011
Katarzyna Tyc
"Modelling of heat shock response in Candida albicans"
23.02.11 - 17:15 (Chausseestr. 117, Hörsaal 523)
Prof. Hiroshi Mamitsuka
"PathRanker: Mining metabolic network through gene expression"
17.02.2011
Dr. Szymon Stoma
"Analyzing intracellular gradients - Spatio-Temporal Simulation Environment (STSE) study case"
15.02.2011
Christian Diener
10.02.2011
Martina Fröhlich
"The basic thermodynamic model of cation homeostasis of Saccharomyces cerevisiae - confronted with experimental data"
01.02.2011
Judith Wodke
"Metabolic modeling of Mycoplasma pneumoniae - state of the art"
27.01.2011
Christian Waltermann
06.01.2011
Adriana Supady
"Efficient replication in S.cerevisiae requires an altering fork rate for short chromosomes"
06.01.2011
Dr. Matteo Barberis
"Forkhead TFs control timing of mitotic cyclins expression in cell cycle regulation"
2010
21.12.2010
Till Scharp
"Networks and modeling or reprogramming: The SMBioNet method"
9.12.2010
Dr. Thomas Handorf
"Complex Networks in Cancer Signaling"
18.11.2010
Dr. Marcus Krantz
"Mapping signal transduction networks - A framework for compilation and visualisation of high quality knowledge compatible with mathematical modelling"
25.11.2010
Thomas Spiesser
"Size regulation is an intrinsic property of growing yeast cells"
11.11.2010
Falco Krause, Marvin Schulz,Thimo Lubitz, Dr. Wolfram Liebermeister
"Live demonstration of semanticSBML 2.0"
04.11.2010
Wolfgang Giese
"A spatial model for intercellular communication of yeast using partial differential equations"
02.11.2010
Uwe Benary
"Mathematical Modelling of the Wnt/beta-catenin Pathway and its Crosstalk to NF-kappaB Signalling"
28.10.2010
Prof. Markus J. Tamàs
"Molecular biology of arsenic tolerance in yeast"
21.10.2010
Carl-Frederik Tiger
"Yeast MAP-Kinase signalling"
28.09.2010
Falko Krause
23.09.2010
Dr. François Guillaud
"Modelling of the endocrine renin-angiotensin system and more"
09.09.2010
Dr. Samuel Drulhe
"Exploration of transcriptional regulatory networks in Bacillus subtilis with omics data"
09.07.2010
Dr. Michal K. Stachowiak, (Associate Professor Pathology and Anatomical Sciences,University at Buffalo)
"Novel Integrative Nuclear Signaling Module for Neuronal Development and Regenerative Medicine"
08.07.2010
Dr. Matteo Barberis
"Investigation of PPIs in the Budding Yeast Cell Cycle by Fluorescence-Based Microscopy"
01.07.2010
Prof. Gabriel del Rio
"To be (a program) or not to be"
29.06.2010
Calle Tiger
"Yeast MAPK signalling"
10.06.2010
Erkan Engin Kuruoglu
"Bayesian Signal Processing: a tutorial and case study"
8.6.2010
Hayssam Soueidan
"Discrete Event Modeling and Analysis for Systems Biology Models"
06.05.2010
Dr. Matteo Barberis
"Systems Biology of Cell Cycle Regulation and Link to Neurodegenerative Disorders"
29.04.2010
Dr. Marta Hoffman-Sommer
"Kinetic modeling of an artificial cellular logic-gates system"
27.04.2010
Susanne Kummer
"Detection of influenza H1N1 mRNA in single living infected MDCK cells using fluorescent FIT-PNAs as single labelled high-breedization probes"
22.04.2010
Falko Krause
"Bioinformatics for Systems Biology: Web Services, Annotations, Similarity, Storage, Simulation"
15.04.2010
Judith Wodke
"Modeling Mycoplasma pneumoniae Metabolism"
01.04.2010
Clemens Kühn
"To maintain vital functions in times of crisis. A different view on osmoadaptation"
11.03.2010
Christian Waltermann
"Signalling in yeast"
25.02.2010
Christian Diener
"Patience vs. Accuracy: Gradient Sensing in Budding Yeast"
18.02.2010
Nadine Töpfer
"Optimization of enzyme profile in metabolic pathways"
11.02.2010
Axel Kowald
"Biology and Modelling of the Aging Process. An Overview"
28.01.2010
Thomas Handorf
"NetworkCurator: A tool for the curation of complex signaling networks"
21.01.2010
Bente Kofahl
"Mathematical modelling of non-canonical NF-kappaB-signalling"
07.01.2010
Katharina Baum
"Mechanisms underlying the robustness of cellular oscillations"
2009
17.12.2009
Jozsef Bruch
"Lost in translation - but how much? A story of predicting fluxes from transcription data in yeast glycolysis"
10.12.2009
Dr.Matteo Barberis
"A Systems Biology Investigation of Cell Cycle Regulation in Budding Yeast"
26.11.2009
Marvin Schulz
"Annotation based clustering of functionally related models"
19.11.2009
Dr. Szymon Stoma
"STSE: a microscopy image driven spatial simulation enviroment"
12.11.2009
Susanne Gerber
"Computational analysis of microarray data: The impact of metallic salt stress on S. cerevisiae"
05.11.2009
Martina Fröhlich
"Analyzing AQP2 trafficking with time dependent sensitivity analysis"
29.10.2009
Katarzyna Tyc
"What is Candida albicans?"
7.10.2009
Dr. Gabriele Schreiber
"Principles of flim-FRET for measuring protein interactions and the problems with yeast cells"
15.10.2009
Jian Li
"An online phenological database covering 20th in Germany: analysis and tool"
08.10.2009
Dr. Wolfram Liebermeister
"Methods for model construction and data integration in metabolic modelling"
01.10.2009 - 10:00
Dr. Gabriel Del Rio Guerra
"Towards a novel Systems Biology approach for drug design"
24.09.2009
Dr. Simon Borger
"Does the proton pump drive potassium uptake in yeast?"
17.09.2009
Clemens Kühn
"Data Aquisition and Modeling of Osmoadaptation in Yeast"
10.09.2009
Dr. Jörg Schaber
"Arsenite response in yeast"
23.07.2009
Gunnar Cedersund
"Sound usage of modelling despite over-parametrisation in the study of type 2 diabetes"
16.07.2009
Till Scharp und Max Flöttmann
"A computational model for understanding stem cell, trophectoderm and endoderm lineage determination"
09.07.2009
Gady Goldsobel
"On the 'Extinctions in heterogeneous environments and the evolution of modularity'"
02.07.2009
Matthias Bock
"Negative feedback that improves information transmission in yeast signalling"
25.06.2009
Dr. Thomas Handorf
"On the ColoNet project"
18.06.2009
Falko Krause
"Towards understanding yeast cation homeostasis: Which signals lead to the expression of the ENA ATPase Transporter?"
11.06.2009
Willi Gottstein
04.06.2009
Dr. Jörg Schaber
"Water potentials and signalling in yeast"
28.05.2009
Clemens Kühn
"Systematic investigation of osmoadaptation in yeast"
Tue, 19.05.2009
Thomas Spiesser
"Is DNA Replication Rate Independent of Sequence Composition or Length in Budding Yeast?"
14.05.2009
Wai-Cheung Ng
"Mathematical modelling of the regulation of osmotic pressure in Saccharomyces Cerevisiae"
07.05.2009
József Bruck
"A data based yeast glycolysis model and its newest adventures"
30.04.2009
Jannis Uhlendorf
"Prediction of optimal enzymatic regulation achitectures"
23.04.2009
Dr. Zhike Zi
"Decoding the nature of Hog1 response to pulse osmotic stress"
16.04.2009
Avidan Neumann, Israel
"A Paradigm Shift in Understanding Resistance Evolution Patterns with a Multi-Level Viral Dynamics Model Incorporating Intra-Cellular Replication"
09.04.2009
Marvin Schulz
"Finding optimal drug targets in kinetic network models"
02.04.2009
Christian Waltermann
"Robustness and fragility in signalling pathways in yeast"
19.03.2009
Szymon Stoma
"Modelling development of shoot apical meristem of Arabidopsis"
12.03.2009
Alexander Skupin
12.02.2009
Marta Hoffman-Sommer
"TBA (Crosstalk between signaling pathways)"
29.01.2009
Wolfram Liebermeister
"TBA (Parameter determination for metabolic models)"
22.01.2009
Volker Ißbrücker
"Flux Balance Analysis"
Matteo Barberis
"Yeast Cell Cycle Modeling"
08.01.2009
Christian Diener
"Signal Filtering by Membrane-based Dimerization"
2008
11.12.2008
Hendrik Hache
"Reverse Engineering of Gene Regulatory Networks"
20.11.2008
Martina Fröhlich
"Mathematical Modeling of Aquaporin-2 Trafficking and Regulation"
13.11.2008
Kevin Thurley
"Nucleation of Ca(2+) Channel Clusters - a New Approach in Modelling Spatially Resolved Biological Systems"
06.11.2008
Sergio Grimbs
"Metabolic network modelling with incomplete kinetic information"
30.10.2008
Thomas Schendel
"Calcium dynamics in heart cells - model approaches"
23.10.2008
Moritz Krog
"Modeling the Snf1-Pathway: A systems biology approach to glucose signaling in yeast"
16.10.2008
Zhike Zi
"Mathematical modeling and kinetic analysis of cellular signaling pathways"
13.03.2008
Anastasia Lavrova (HUB, Institut für Physik)
"Dynamical behavior of distributed biochemical system (glycolysis)"
31.01.2008
Jörn Schmiedel
"Stability analysis of glycolysis"
24.01.2008
Michael Rempel (MPI für Dynamik komplexer technischer Systeme, Magdeburg)
"Model composition"
17.01.2008
Nadine Töpfer
"Yeast glycolytic oscillations: a new definition of oscillophore strength"
Victor Greiff
"How gene order is influenced by the biophysics of transcription"
10.01.2008
Thomas Schendel (HU, Institut für Physik)
"Stochastics in spatio-temporal dynamics of pH and membrane potential in algae cells"