Teaching



Our group is engaged in the diploma, bachelor, and master study courses in biophysics. Each semester (in May and November) we offer a 2-week course on "Mathematical modelling of biological systems" (focusing on cellular processes, self-organisation and evolution).

Lectures      Summer semester - 2017

18 April 2017 - 22 July 2017

Vorlesung:      Theoretische Physik

Bachelor
Mondays - 08:15
Großer Seminarraum
Dr. Alexander Skupin

Vorlesung:      Theoretische Biophysik

Bachelor
Mondays - 10:15
Großer Seminarraum
Prof. Edda Klipp

Übungen/Praktikum:      Theoretische Physik/Theoretische Biophysik

Bachelor
Tuesdays - 08:15
Großer Seminarraum
Prof. Edda Klipp/Dr. Alexander Skupin

Vorlesung:      Systembiologie

Master
Mondays - 14:15
Großer Seminarraum
Prof. Edda Klipp

Kurs:      Modul MBph7-A: Systembiologie

Master
May 23 - June 02, 2017
Großer Seminarraum
Prof. Edda Klipp

Oberseminar:      Theoretische Biophysik

Master/PhD
Thursdays - 13:15
Großer Seminarraum
Prof. Edda Klipp

Lectures      Winter semester - 2016/17

17 Oct. 2016 - 18 Feb. 2017

Vorlesung/Übungen:      Thermodynamik von Nichtgleichgewichtsprozessen

Bachelor
Mondays - 12:15
Großer Seminarraum
Prof. Edda Klipp

Vorlesung/Übungen:      Modelle zellulärer Prozesse

Bachelor
Fridays - 8:15
Kleiner Seminarraum
Dr. Jana Wolf

Kurs:      Modulvertiefung Bph V1 - Theoretische Biophysik

"Mathematische Modellierung biologischer Systeme"
Bachelor
November 22 - December 02, 2016
Großer Seminarraum, Kleiner Seminarraum, Computerpool
Prof. Edda Klipp

Vorlesung:      Elektrodynamik

Master
Mondays - 15:15
Kleiner Seminarraum
Prof. Edda Klipp

Vorlesung:      Statistische Physik

Master
Tuesdays - 08:15
Großer Seminarraum
Prof. Edda Klipp

Übungen:      Theoretische Physik

Master
Wednesdays - 08:15
Großer Seminarraum
Prof. Edda Klipp

Vorlesung:      Quantenbiophysik und Molekulardynamik

Master
Fridays - 08:15
Großer Seminarraum
Dr. Pawel Romanczuk

Vorlesung:      The Molecular Basis of Systems Biology

Master
Mondays - 10:15
Großer Seminarraum
Dr. Marcus Krantz

Wahlpflichtmodul:      The Molecular Basis of Systems Biology

Master
January 03 - 13, 2017
Großer Seminarraum
Dr. Marcus Krantz

Oberseminar:      Theoretische Biophysik

Master/PhD
Thursdays - 13:15
Großer Seminarraum
Prof. Edda Klipp

Lectures      Summer semester - 2015

18 April 2016 - 23 July 2016

Vorlesung:      Theoretische Physik

Bachelor
Mondays - 08:15
Großer Seminarraum
Dr. Alexander Skupin

Vorlesung:      Theoretische Biophysik

Bachelor
Mondays - 10:15
Großer Seminarraum
Prof. Edda Klipp

Übungen/Praktikum:      Theoretische Physik/Theoretische Biophysik

Bachelor
Tuesdays - 08:15
Großer Seminarraum
Prof. Edda Klipp/Dr. Alexander Skupin

Vorlesung:      Systembiologie

Master
Mondays - 14:15
Großer Seminarraum
Prof. Edda Klipp

Kurs:      Theoretische Biophysik II - Systembiologie

Master
May 24 - June 06, 2016
Großer Seminarraum
Prof. Edda Klipp
Vorbesprechung: May 02, 2016, 14:00, Inv. 42, Neubau, Großer Seminarraum

Oberseminar:      Theoretische Biophysik

Master/PhD
Thursdays - 13:15
Großer Seminarraum
Prof. Edda Klipp

Lectures      Winter semester - 2015/16

12 Oct. 2015 - 13 Feb. 2016

Vorlesung/Übungen:      Thermodynamik von Nichtgleichgewichtsprozessen

Bachelor
Mondays - 12:15
Großer Seminarraum
Prof. Edda Klipp

Vorlesung/Übungen:      Modelle zellulärer Prozesse

Bachelor
Fridays - 8:15
Kleiner Seminarraum
Dr. Jana Wolf

Kurs:      Modulvertiefung Bph V1 - Theoretische Biophysik

"Mathematische Modellierung biologischer Systeme"
Bachelor
December 01 - 11, 2015
Großer Seminarraum, Kleiner Seminarraum, Computerpool
Prof. Edda Klipp

Vorlesung:      Elektrodynamik

Master
Mondays - 16:15
Großer Seminarraum
Dr. Wolfram Liebermeister

Vorlesung:      Statistische Physik

Master
Tuesdays - 08:15
Großer Seminarraum
Prof. Edda Klipp

Übungen:      Theoretische Physik

Master
Wednesdays - 08:15
Großer Seminarraum
Prof. Edda Klipp

Vorlesung:      Quantenbiophysik und Molekulardynamik

Master
Fridays - 08:15
Großer Seminarraum
Prof. Dirk Brockmann

Oberseminar:      Theoretische Biophysik

Master/PhD
Thursdays - 13:15
Großer Seminarraum
Prof. Edda Klipp

Lectures      Summer semester - 2015

13 April 2015 - 18 July 2015

Übungen/Praktikum:      Theoretische Biophysik/Theoretische Physik

Bachelor
Mondays - 08:15
Großer Seminarraum
Prof. Edda Klipp/Dr. Alexander Skupin

Vorlesung:      Theoretische Biophysik

Bachelor
Mondays - 10:15
Großer Seminarraum
Prof. Edda Klipp

Vorlesung:      Theoretische Physik

Bachelor
Tuesdays - 08:15
Großer Seminarraum
Dr. Alexander Skupin

Vorlesung:      Systembiologie

Master
Mondays - 14:15
Großer Seminarraum
Prof. Edda Klipp

Vorlesung:      Systems Biology of Yeast

Master
Mondays - 16:15
Großer Seminarraum
Dr. Marcus Krantz

Kurs:      Theoretische Biophysik II - Systembiologie

Master
May 19 - 29, 2015
Großer Seminarraum
Prof. Edda Klipp
Vorbesprechung: April 20, 2015, 14:30, Inv. 42, Neubau, Großer Seminarraum

Oberseminar:      Theoretische Biophysik

Master/PhD
Thursdays - 13:15
Großer Seminarraum
Prof. Edda Klipp

Lectures      Winter semester - 2014/15

13 Oct. 2014 - 14 Feb. 2015

Vorlesung/Übungen:      Thermodynamik von Nichtgleichgewichtsprozessen

Bachelor
Mondays - 12:15
Großer Seminarraum
Prof. Edda Klipp

Vorlesung/Übungen:      Modelle zellulärer Prozesse

Bachelor
Thursdays - 8:15
Großer Seminarraum
Dr. Jana Wolf

Kurs:      Modulvertiefung Bph V1 - Theoretische Biophysik

"Mathematische Modellierung biologischer Systeme"
Bachelor
December 02 - 12, 2014
Großer Seminarraum, Kleiner Seminarraum, Computerpool
Prof. Edda Klipp, Dr. Judith Wodke, Timo Lubitz, Dr. Jannis Uhlendorf, Max Schelker, Dr. Max Flöttmann, Matthias Reis,
Dr. Clemens Kühn, Marie Hemmen

Kurs:      BZQ Module

"Python für Lebenswissenschaften"
Bachelor
February 03 - 13, 2015
Großer Seminarraum
Dr. Max Flöttmann, Jens Hahn, Timo Lubitz, Prof. Andreas Möglich, Max Schelker

Vorlesung:      Statistische Physik

Master
Mondays - 16:15
Großer Seminarraum
Prof. Edda Klipp
Dr. Martin Seeger, Jens Hahn

Vorlesung:      Elektrodynamik

Master
Tuesdays - 08:15
Großer Seminarraum
Dr. Wolfram Liebermeister
Dr. Benedikt Obermayer, Wolfgang Giese

Übungen:      Theoretische Physik

Master
Wednesdays - 08:15
Großer Seminarraum
Prof. Edda Klipp

Vorlesung:      Quantenbiophysik und Molekulardynamik

Master
Fridays - 08:15
Großer Seminarraum
Prof. Prof. Dirk Brockmann
Dr. Martin Seeger, Jens Hahn

Oberseminar:      Theoretische Biophysik

Master/PhD
Thursdays - 13:15
Großer Seminarraum
Prof. Edda Klipp

Lectures      Summer semester - 2014

14 April 2014 - 19 July 2014

Vorlesung:      Theoretische Physik

Bachelor
Mondays - 08:15
Großer Seminarraum
Dr. Alexander Skupin

Vorlesung:      Theoretische Biophysik

Bachelor
Mondays - 10:15
Großer Seminarraum
Prof. Edda Klipp

Übungen/Praktikum:      Theoretische Biophysik/Theoretische Physik

Bachelor
Tuesdays - 08:15
Großer Seminarraum
Prof. Edda Klipp/Dr. Alexander Skupin

Vorlesung:      Systembiologie

Master
Mondays - 14:15
Großer Seminarraum
Prof. Edda Klipp

Vorlesung:      Systems Biology of Yeast

Master
Mondays - 16:15
Kleiner Seminarraum
Dr. Marcus Krantz

Kurs:      Theoretische Biophysik II - Systembiologie

Master
May 20 - 30, 2014
Großer Seminarraum
Prof. Edda Klipp
Vorbesprechung: April 28, 2014, 14:00, Inv 42, Neubau, Großer Seminarraum

Oberseminar:      Theoretische Biophysik

Master/PhD
Thursdays - 13:15
Großer Seminarraum
Prof. Edda Klipp

Lectures      Winter semester - 2013/14

14 Oct. 2013 - 15 Feb. 2014

Vorlesung/Übungen:      Thermodynamik von Nichtgleichgewichtsprozessen

Bachelor
Mondays - 10:15
Großer Seminarraum
Prof. Edda Klipp

Vorlesung/Übungen:      Modelle zellulärer Prozesse

Bachelor
Thursdays - 8:15
Großer Seminarraum
Dr. Thomas Spießer

Kurs:      Modulvertiefung Bph V1 - Theoretische Biophysik

"Mathematische Modellierung biologischer Systeme"
Bachelor
November 19 - 29, 2013
Großer Seminarraum, Kleiner Seminarraum, Computerpool
Prof. Edda Klipp

Kurs:      BZQ Module

"Python für Lebenswissenschaften"
Bachelor
February 02 - 14, 2014
Großer Seminarraum
Prof. Andreas Möglich, Falko Krause, Marvin Schulz, Max Flöttmann

Vorlesung:      Elektrodynamik

Master
Wednesdays - 08:15
Großer Seminarraum
Dr. Wolfram Liebermeister
Björn Goldenbogen, Wolfgang Giese

Vorlesung:      Statistische Physik

Master
Tuesdays - 08:15
Großer Seminarraum
Prof. Dirk Brockmann

Übungen:      Theoretische Physik

Master
Wednesdays - 08:15
Großer Seminarraum
Prof. Edda Klipp

Vorlesung:      Quantenbiophysik und Molekulardynamik

Master
Fridays - 08:15
Großer Seminarraum
Prof. Edda Klipp
Dr. Martin Seeger, Jens Hahn

Oberseminar:      Theoretische Biophysik

Master/PhD
Thursdays - 13:15
Großer Seminarraum
Prof. Edda Klipp

Lectures      Summer semester - 2013

08 Apr. 2013 - 12 July 2013

Übungen/Praktikum:      Theoretische Biophysik/Theoretische Physik

Bachelor
Mondays - 08:15
Großer Seminarraum
Prof. Edda Klipp
Theoretische Biophysik: Claudia Back, Max Schelker
Theoretische Physik: Matthias Reis, Till Scharp

Vorlesung:      Theoretische Biophysik

Bachelor
Mondays - 10:15
Großer Seminarraum
Dr. Clemens Kühn

Vorlesung:      Theoretische Physik

Bachelor
Tuesdays - 08:15
Großer Seminarraum
Prof. Edda Klipp

Vorlesung:      Systembiologie

Master
Mondays - 14:15
Großer Seminarraum
Prof. Edda Klipp

Vorlesung:      Hefesystembiologie

Master
Wednesdays - 08:15
Großer Seminarraum
Dr. Marcus Krantz

Kurs:      Theoretische Biophysik II - Systembiologie

Master
May 14 - 24, 2013
Großer Seminarraum
Prof. Edda Klipp
Vorbesprechung: April 29, 2013, 14:00, Inv 42, Neubau, SR

Oberseminar:      Theoretische Biophysik

Master/PhD
Thursdays - 13:15
Großer Seminarraum
Prof. Edda Klipp

Lectures      Winter semester - 2012/13

15 Oct. 2012 - 16 Feb. 2013

Vorlesung:      Thermodynamik von Nichtgleichgewichtsprozessen

Bachelor
Mondays - 10:15
Großer Seminarraum
Prof. Edda Klipp

Vorlesung:      Modelle zellulärer Prozesse

Bachelor
Thursdays - 8:15
Großer Seminarraum
Dr. Thomas Spießer

Kurs:      Modulvertiefung Bph V1 - Theoretische Biophysik

Bachelor
20 Nov. 2011 - 30 Nov. 2012
Großer Seminarraum, Kleiner Seminarraum, Computerpool
Prof. Edda Klipp
Katharina Baum, Jose Dinto, François Guillaud, Alexander Hoffmann, Axel Kowald, Falko Krause, Clemens Kühn, Orianne Mazemondet, Ulrike Münzner, Magdalena Rother, Till, Scharp, Katarzyna Tyc

Vorlesung:      Elektrodynamik

Master
Mondays - 16:15
Großer Seminarraum
Prof. Edda Klipp
Wolfgang Giese, Björn Goldenbogen

Vorlesung:      Statistische Physik

Master
Tuesdays - 08:15
Großer Seminarraum
Dr. Thomas Handorf
Katja Tummler, Friedemann Uschner

Übungen:      Theoretische Physik

Master
Wednesdays - 08:15
Großer Seminarraum
Prof. Edda Klipp

Vorlesung:      Quantenbiophysik und Molekulardynamik

Master
Fridays - 08:15
Großer Seminarraum
Dr. Roland Mitric

Oberseminar:      Theoretische Biophysik

Master/PhD
Thursdays - 13:15
Großer Seminarraum
Prof. Edda Klipp

Lectures      Summer semester - 2012

10 Apr. 2012 - 14 July 2012

Übungen/Praktikum:      Theoretische Biophysik/Theoretische Physik

Bachelor
Mondays - 08:15
Großer Seminarraum
Prof. Edda Klipp
Theoretische Biophysik: Katharina Albers, Katarzyna Tyc
Theoretische Physik: Margit Heiske, Friedemann Uschner

Vorlesung:      Theoretische Biophysik

Bachelor
Mondays - 10:15
Großer Seminarraum
Prof. Edda Klipp

Vorlesung:      Theoretische Physik

Bachelor
Tuesdays - 08:15
Großer Seminarraum
Prof. Edda Klipp

Vorlesung:      Systembiologie

Master
Mondays - 14:15
Großer Seminarraum
Prof. Edda Klipp

Kurs:      Theoretische Biophysik II - Systembiologie

Master
15 May - 25 May 2012
Zeitplan
Großer Seminarraum
Prof. Edda Klipp
Vorbesprechung: 23 Apr. 2012, 12:00, Inv 42, Neubau, SR
Katharina Albers, Christian Diener, Max Föttmann, François Guillaud, Thomas Handorf, Margit Heiske,
Marcus Krantz, Falko Krause, Orianne Mazemondet, Till Scharp, Marvin Schulz, Judith Wodke

Oberseminar:      Theoretische Biophysik

Master/PhD
Thursdays - 13:15
Großer Seminarraum
Prof. Edda Klipp

Lectures      Winter semester - 2011/12

17 Oct. 2011 - 18 Feb. 2012

Vorlesung/übungen:      Thermodynamik von Nichtgleichgewichtsprozessen

Bachelor
Mondays - 10:15
Großer Seminarraum
Prof. Edda Klipp

Vorlesung/Übungen:      Modelle zellulärer Prozesse

Bachelor
Thursdays - 8:15
Großer Seminarraum
Prof. Jana Wolf

Kurs:      Modulvertiefung Bph V1 - Theoretische Biophysik

Bachelor
22 Nov. 2011 - 02 Dec. 2011
Großer Seminarraum, Kleiner Seminarraum, Computerpool
Prof. Edda Klipp
Wolfgang Giese, François Guillaud, Margit Heiske, Marta Hoffmann-Sommer, Bente Kofahl, Axel Kowald, Falko Krause, Clemens Kühn, Orianne Mazemondet, Katarzyna Tyc

Vorlesung:      Elektrodynamik

Master
Mondays - 16:15
Großer Seminarraum
Prof. Edda Klipp

Vorlesung:      Statistische Physik

Master
Mondays - 08:15
Großer Seminarraum
Dr. Thomas Handorf

Übungen/Praktikum:      Theoretische Physik

Master
Mondays - 08:15
Großer Seminarraum
Dr. Thomas Handorf

Vorlesung:      Quantenbiophysik und Molekulardynamik

Master
Fridays - 08:15
Großer Seminarraum
Dr. Roland Mitric

Oberseminar:      Theoretische Biophysik

Master
Thursdays - 13:15
Großer Seminarraum
Prof. Edda Klipp

Ringvorlesung:      Cell Signalling

Wednesdays - 09:00
Charité Campus Mitte, Virchowweg 4, Paul Ehrlich Hörsaal

Lectures      Summer semester - 2011

11 Apr. 2011 - 16 July 2011

Übungen:      Theoretische Biophysik/Theoretische Physik (im Wechesel)

Bachelor
Mondays - 08:15
Zentrallabor
Prof. Edda Klipp
Theoretische Biophysik: Timo Lubitz, Katarzyna Tyc
Theoretische Physik: Wolfgang Giese, Margit Heiske

Vorlesung:      Theoretische Biophysik

Bachelor
Mondays - 10:15
Zentrallabor
Prof. Edda Klipp

Vorlesung:      Theoretische Physik

Bachelor
Tuesdays - 08:15
Zentrallabor
Prof. Edda Klipp

Vorlesung:      Systembiologie

Master
Mondays - 14:15
Zentrallabor
Prof. Edda Klipp

Kurs:      Theoretische Biophysik II - Systembiologie

Master
17 May 2011 - 27 May 2011
Zentrallabor
Prof. Edda Klipp
Christian Diener, Samuelhe Drulhe, Marcus Krantz, Clemens Kühn, Timo Lubitz, Marvin Schulz,
Adriana Supady, Katarzyna Tyc, Chritian Waltermann

Oberseminar:      Theoretische Biophysik

Master, PhD
Thursdays - 13:15
Zentrallabor
Prof. Edda Klipp

Lectures      Winter semester - 2010/11

18 Oct. 2010 - 19 Feb. 2011

Thermodynamik von Nichtgleichgewichtsprozessen

Bachelor
Mondays - 10:15
Zentrallabor
Prof. Edda Klipp

Modelle zellulärer Prozesse

Bachelor
Thursdays - 8:30
Zentrallabor
Prof. Jana Wolf

Elektrodynamik

Master
Mondays - 16:15
Seminarraum, 3rd floor
Prof. Edda Klipp

Statistische Physik

Master
Mondays - 08:15
Seminarraum, 3rd floor
Dr. Thomas Handorf

Quantenbiophysik und Molekulardynamik

Master
Fridays - 08:15
Zentrallabor
Dr. Roland Mitric

Oberseminar: Theoretische Biophysik

Thursdays - 13:15
Zentrallabor
Prof. Edda Klipp

Lectures      Summer semester - 2010

12 Apr. 2011 - 17 July 2011

Theoretische Biophysik

Bachelor
Mondays - 10:15
Zentrallabor
Exercises, every second Tuesday - 8:30
Seminarraum, 3rd floor
Prof. Edda Klipp

Theoretische Physik

Bachelor
Fridays - 10:15
Zentrallabor
Exercises, every second Tuesday - 8:30
Seminarraum, 3rd floor
Dr. Jana Schütze

Systembiologie

Master
Mondays - 14:15
Zentrallabor
Prof. Edda Klipp

Oberseminar: Theoretische Biophysik

Master
Wednesdays - 08:15
Zentrallabor
Prof. Edda Klipp

Lectures      Winter semester - 2009/10

12 Oct. 2009 - 13 Feb. 2010

Thermodynamik von Nichtgleichgewichtsprozessen

Bachelor
Wednesdays - 8:30
Zentrallabor
Marvin Schulz

Modelle zellulärer Prozesse

Bachelor
Fridays - 8:30
Zentrallabor
Dr. Wolfram Liebermeister

Elektrodynamik

Master
Mondays - 10:15
Seminarraum, 3rd floor
Prof. Edda Klipp

Statistische Physik

Master
Mondays - 12:15
Seminarraum, 3rd floor
Dr. Szymon Stoma

Quantenbiophysik und Molekulardynamik

Master
Tuesdays - 12:15
Zentrallabor
Dr. Roland Mitric

Oberseminar: Theoretische Biophysik

Thursdays - 13:15
Zentrallabor
Prof. Edda Klipp

Lectures      Summer semester - 2009

14 Apr. 2009 - 18 July 2009

Theoretische Biophysik

Bachelor
Mondays - 10:15
Zentrallabor
Exercises, every second Tuesday 8:30
Seminarraum, 3rd floor
Prof. Edda Klipp

Theoretische Physik

Bachelor
Mondays - 8:15
Zentrallabor
Exercises, every second Tuesday - 8:30
Seminarraum, 3rd floor
Jana Schütze

Systembiologie

Master
Wednesdays - 8:30
Zentrallabor
Prof. Edda Klipp

Lectures      Winter semester - 2008/09

Thermodynamik von Nichtgleichgewichtsprozessen

Wednesdays - 8:30
Zentrallabor
Simon Borger

Modelle zellulärer Prozesse

Fridays - 8:30
Zentrallabor
Dr. Jörg Schaber

Elektrodynamik

Mondays - 10:15
Seminarraum, 3. Etage
Prof. Edda Klipp

Statistische Physik

Mondays - 12:15
Seminarraum 3. Etage
Dr. Wolfram Liebermeister

Quantenbiophysik und Molekulardynamik

Tuesdays - 12:15
Zentrallabor
Dr. Roland Mitric

Oberseminar: Theoretische Biophysik

Thursdays - 13:15
Zentrallabor
Prof. Edda Klipp

Seminars

Unless otherwise specified, the seminars take place at 13:15
in the Biophysics Building, Invalidenstr. 42, Großer Seminarraum (room 312), 3rd floor.

2017

14 December 2017
Björn Goldenbogen

07 December 2017
Jorin Diemer

30 November 2017
Martin Seeger

23 November 2017
Maxim Karnetzki

16 November 2017
Paula Martinell Garcia

09 November 2017
Roman Rainer

02 November 2017
Olofemi Bolaji

26 October 2017
Pascal Iversen

19 October 2017
Jens Hahn

12 October 2017
Ximena Martinez de la Escalera

05 October 2017
Clemens Kühn

28 September 2017
Tom Altenburg

21 September 2017
Severin Ehret

14 September 2017
Josch Pauling

07 September 2017
Marie Hemmen

03 August 2017
Wolfgang Giese
"Cell size and shape dependence of intracellular gradient formation"

27 July 2017
Josch Pauling
"Liver lipid metabolism and the onset of non-alcoholic fatty liver disease"

20 July 2017
Thomas Marschall
"Constraint-based drug metabolism modelling in human kidney"

13 July 2017
Gerson Engel
"A minimal model of the respiratory chain in yeast"

06 July 2017
Julia Schlichting

29 June 2017
Marcus Krantz
"Towards genome-scale models of cellular signal transduction"

22 June 2017
Maria Dost
"Analysing data on the Ras/Raf/Mek/Erk pathway"

15 June 2017
Ana Bulivić
"Resource Balance Analysis model of E. coli."

08 June 2017
Yayoi Natsume-Kitatani
"Data resources and web applications in Toxicogenomics"

01 June 2017
Maria Dost
"Control of translation of photosystem II in Chlamydomonas reinhardtii"

18 May 2017
Judith Wodke
"SysToxChip - Analyzing drug-induced MTF1 activation and modeling DNA repair"

11 May 2017
Paula Martinell Garcia
"Coupling cell cycle and a metabolic oscillator at a single cell level"

04 May 2017
Stefan Forgó
"Shmoo 2.0 - Mating of yeast in 3D"

27 April 2017
Severin Ehret
"Terminating the budded phase: mRNA localization in yeast cell cycle regulation"

20 April 2017
Katja Tummler
"Measuring a yeast cell"

13 April 2017
Lotte Teufel
"Perturbing the cell cycle oscillator in yeast - a transcriptome wide analysis"

30 March 2017
Wolfgang Giese
"Spatial modeling of the membrane-cytosolic interface in protein kinase signal transduction"

23 March 2017
Jens Hahn
"First simulations of the Yeast Cell Model"

16 March 2017
Jannis Uhlendorf
"Yeast growth at the single cell level"

09 March 2017
Jorin Diemer
"Agent based modeling approach for spermatozoa movement in the female bovine reproduction tract"

02 March 2017
Andrea Auconi
"Causal influence and irreversibility"

23 February 2017
Stephan Adler
"Population structure and cell synchronization"

16 February 2017
Olufemi Bolaji
"Modelling the OxPhos complexes"

09 February 2017
Jesper Romers
"rxncon: a language for executable systems biology"

02 February 2017
Björn Goldenbogen
"How fluid is the cell wall of Saccharomyces cerevisiae?"

26 January 2017
Julia Schlichting
"START model parametrization"

19 January 2017
Roman Rainer
"A kinetic model of glycolysis for three cancer cell lines"

12 January 2017
Edda Klipp
"Entropy production and ordering principles"

05 January 2017
Ulrike Münzner
"A Boolean model of the circadian clock"

2016

15 December 2016
Friedemann Uschner
"Complex puzzles: Piecing the YCM together"

08 December 2016
Ana Bulović
"Secretion and stress - from single pathways to systemic responses"

01 December 2016
Severin Ehret
"Why "image science"?"

24 November 2016
Lotte Teufel
"Characterization of yeast cell cycle deletion mutants"

17 November 2016
Stefan Forgó
"YCM-framework: status of development"

10 November 2016
Martin Hugo
"Metabolic regulation by thiol peroxidases: challenges vs. rewards"

03 November 2016
Paula Martinell Garcia
"Expression of ATP biosensors in yeast cells"

27 October 2016
Wolfgang Giese
"Spatial modeling of signaling cascades"

20 October 2016
Tom Altenburg
"On applications of a volume model"

13 October 2016
Wiebke Schmidt
"Single Cell Quantification of Cell Cycle Regulating Genes in Budding Yeast - Results"

06 October 2016
Markus Krantz
"Towards comprehensive models of signal transduction networks"

29 September 2016
Jens Hahn
"Yeast cell model: complexity and scalability"

22 September 2016
Danielle Gallagher
"Understanding the regulatory factors that control flux through fatty acid synthesis in E. coli: establishing a model to improve on yield"

15 September 2016
Jannis Uhlendorf
"Influence of external osmotic changes on intracellular pH in S. cerevisiae"

08 September 2016
Martin Seeger
"Translation efficiency in a discrete protein translation model for yeast"

01 September 2016
Judith Wodke
"SysTox: State of the art in modelling"

25 August 2016
Sebastian Thieme
"New insights in rxncon"

18 August 2016
Gabriele Schreiber
"News from the wet lab"

04 August 2016
Katja Tummler
"Two parallel pathways implement robust propionate catabolism and detoxification in mycobacteria"

28 July 2016
Marie Hemmen
"A quantitative description of S. cerevisiae's cell shape"

21 July 2016
Björn Goldenbogen
"Theoretical and experimental strain assessment on shmooing yeast cells"

14 July 2016
Andrea Auconi
"Causal influence in the linear response model"

07 July 2016
Laura Stumpf
"Towards a multi-tissue model of liver and kidney: a comprehensive reconstruction of the human kidney metabolism"
Josch Pauling
"Computational lipidomics"

05 July 2016
Francesco Tacchino
"Modellierung des Elektronentransports am Photo-System 1"

30 June 2016
Stefan Adler
"Learning from modeling - A practical example"

16 June 2016
Ulrike Münzner
"Large-scale reconstruction of signalling pathways"

09 June 2016
Julia Schlichting
"Modelling the G1 to S Phase Transition - a story about arising questions"

02 June 2016
Wiebke Schmidt
"Single cell quantification of cell cycle regulating genes"

26 May 2016
Ximena Martínez
"Paralogous diversification: repercussion on metabolic fluxes"

19 May 2016
Wolfgang Giese
"Intercellular communication motifs in mating yeast

05 May 2016
Ana Bulović
"The stress of secreting recombinant proteins in E. coli"

28 April 2016
Roman Rainer
"Modelling a metabolic pathway over a cell cycle"

21 April 2016
Paula Martinell
"Understanding antimicrobial peptides through a Ras-cAMP-PKA mediated integration of cell division and metabolism"

14 April 2016
Laura Stumpf
"A mathematical model of human kidney"

07 April 2016
Tom Altenburg
"Treating bud formation lika a two-balloon?"

31 March 2016
Friedemann Uschner
"How to stop cycling: A guide for proliferation-addicted yeast cells"

24 March 2016
Max Schelker
"Analyzing immune cell infiltration in tumor tissue based on RNASeq data"

17 March 2016
Severin Ehret
"Cytoplasmic mRNP dynamics in budding yeast"

10 March 2016
Jesper Romers
"Rxncon: sets, states, rules and correlation"

25 Feb. 2016
Max Flöttmann

18 Feb. 2016
Wenke Müller
"Mathematical modelling of ion fluxes based on Onsager's phenomenological equations"

04 Feb. 2016
Andrea Auconi
"Quantifying causal influence"

28 Jan. 2016
Adrian Zachariae
"Modeling the mammalian unfolded protein response"

21 Jan. 2016
Maria Dost
"A probabilistic boolean model for the Ras/Raf/Mek/Erk pathway"
Mareike Simon
"Dynamic modeling of the cell wall integrity pathway"

14 Jan. 2016
Jorin Diemer
"Cell cycle dependent gene regulation in yeast"

07 Jan. 2016
Stefan Forgó
"Next generation modeling - a brief introduction into the new WCM-framework"

2015

03 Dec. 2015
Martin Seeger
"Reality check of a discrete protein translation model"

26 Nov. 2015
Ulrike Münzner
"A map of life - the cell cycle in yeast"

19 Nov. 2015
Wolfgang Giese
"3D reconstruction of a yeast cell from confocal imaging"

12 Nov. 2015
Stephan Adler
"Cell cycle synchronization and population structure of budding yeast"

05 Nov. 2015
Ana Bulović
"A model of a post-translational protein secretion in E. coli"

29 Oct. 2015
Vera Schützhold
"Mathematical modeling of lipid metabolism in yeast"

22 Oct. 2015
Jens Hahn
"Combining cell cycle and gene regulation models"

15 Oct. 2015
Katja Tummler
"Thermodynamics of the central carbon metabolism in mycobacteria"

08 Oct. 2015
Severin Ehret
"Multifocus microscopy: the key to in toto live cell imaging with single molecule resolution?"

01 Oct. 2015
Timo Lubitz
"SBtab: Bigger, better, awesomer"

24 Sep. 2015
Marcus Krantz
"Towards genome scale reconstruction and validation of signal transduction networks"

17 Sep. 2015
Björn Goldenbogen
"Yeast mating morphogenesis"

10 Sep. 2015
Gabriele Schreiber
"What is going on in the wet lab"

13 Aug. 2015
Maria Dost
"A probabilistic boolean model of the Ras/Raf/Mek/Erk pathway"

06 Aug. 2015
Mareike Simon
"Modeling the cell wall integrity pathway"

25 June 2015
Felix Fauer
"Territorial pattern formation of wild pike"

18 June 2015
Judith Wodke
"SysToxChip - modeling projects"

11 June 2015
Tom Altenburg
"Solving the rheological volume model analytically"

04 June 2015
Thomas Spiesser
"Growth control, singalling and stress in yeast - true story"

28 May 2015
Severin Ehret
"Cell Cycle progression in yeast: what kicks off mitosis?"

21 May 2015
Wolfgang Giese
"Modeling of yeast morphology changes"

07 May 2015
Sebastian Thieme
"rxncon - An introduction to reaction and contingency based network reconstruction"

30 April 2015
Katharina Albers
"SAMoA - a Method to Investigate Unknown Modes of Actions of Plant Protectants"

16 April 2015
Friedemann Uschner
"Conducting Information: To talk cross, or not to talk cross, that is the Question..."

09 April 2015
Max Schelker
"Building shiny web applications with R"

26 March 2015
Ruben Vazquez-Uribe
"Nutrient sensing in yeast: TOR pathway"

19 March 2015
Jens Hahn
"Impressions of the ’VW Whole Cell Summer School’"

12 March 2015
Matthias Reis
"Analysis of single photon data for confocal microscopy of live cells"

05 March 2015
Wolfram Liebermeister
"Enzyme economy in metabolic networks"

26 Feb. 2015
Jannis Uhlendorf
"Understanding the interplay between osmotic stress response and ion homeostasis in Saccharomyces cerevisiae: An approach integrating in-vivo imaging, microfluidics and mathematical modeling"

19 Feb. 2015
Jorin Diemer
"Analyzing the competition between viral and human protein synthesis after influenza virus attack"

12 Feb. 2015
Judith Wodke
"SYSTOXCHIP - Project overview"

05 Feb. 2015
Martin Seeger
"A discrete model for protein translation"

29 Jan. 2015
Adrian Zachariae
"A mathematical model linking oscillatory gene expression in Mycobacterium tuberculosis with DNA supercoiling"

27 Jan. 2015 - 14:00 room 312
Jana Linnik
"Automatic validation of yeast signaling models"

22 Jan. 2015
Totta Kasemo
"Energy changes can explain PKA regulation in yeast. A model of the Protein Kinase A signaling pathway"

08 Jan. 2015
Stephan Adler
"Cell cycle modeling and cell synchronization in silico"

2014

18 Dec. 2014
Timo Lubitz
"SBtab: conventions for structured data tables in Systems Biology"

11 Dec. 2014
Ulrike Münzner
"Committing without catching up - Passing START in silico even with constant Cln3 to Whi5 ratio"

04 Dec. 2014
Totta Kasemo
"Modelling comparison of populations and single cells to better understand the PKA pathway"

27 Nov. 2014
Sebastian Thieme
"rxnconcompiler - bridging large scale reconstruction of signalling networks and mathematical modelling"

20 Nov. 2014
Severin Ehret
"Tracking single mRNAs with MOSAICsuite"

13 Nov. 2014
Max Flöttmann
"Data mining and visualization using R: A beginners guide to fishing"

06 Nov. 2014
Max Schelker
"How to display data (badly)"

30 Oct. 2014
Wolfgang Giese
"How cell shape and size influence cell polarization"

28 Oct. 2014, 14:30
Matthias Reis and Aouefa Amoussouvi
"Quantitative characterization of transcription regulation of cell cycle genes in S. cerevisiae. A experimental and computational study"

23 Oct. 2014
Arturo Blázquez Navarro
"Differential immune response against two BKV antigens explaining control of BK viremia post-kidney transplant"

16 Oct. 2014
Samuel Drulhe
"Computational and Systems Biology: a survey on tools, methods, standards, and collaborations"

02 Oct. 2014, 11:00
Ruben Agrelo (Uruguay)
"Epigenitic ageing model"

10 Sept. 2014, 13:15
Clemens Kühn
"SysteMTb 2010-2014 - Summary (and outlook)"

04 Sept. 2014
Tom Altenburg
"A rheological growth model of budding yeast"

28 August 2014
Katharina Albers
"Finding drug targets in Magnaporthe grisea - with the help of MCA?!"

21 August 2014
Mareike Simon
"Dynamic Modeling of the CCM of HEK293 using Parameter Balancing"

14 August 2014
Timo Lubitz
"SBtab - a standard table format for Systems Biology"

31 July 2014
Ulrike Münzner
"Increase in biosynthetic capacity leads to a switch during G(1)/S transition even with constant Whi5 to Cln3 ratio in yeast"

17 July 2014
Malte Hilsch

10 July 2014
Totta Kasemo
"Mapping details in the PKA pathway - questions identified and outlook for modelling"

03 July 2014
Lars Zerbe and Marlene Lindner

26 June 2014
Vasco Pesquita
"Signalling pathways in MTb: a Signal Quantification approach"

19 June 2014
Robert Welke and Malte Hilsch
"Master talks"

12 June 2014
Max Flöttmann
"Modelling Wnt Signalling"

05 June 2014
Maria Dost
"Modelling the Ras/Raf/Mek/Erk Pathway using the Reaction-Contingency Method"

22 May 2014
Jannis Uhlendorf
"Modeling ion homeostasis using Onsanger's law"

15 May 2014
Judith Wodke
"Modeling M. pneumoniae: state of the art and future plans"

08 May 2014
Martin Seeger
"A discrete model for protein translation"

24 April 2014
Sebastian Thieme
"Making things less complicated: A systematic component selection algorithm for visualising biological networks"

17 April 2014
Aouefa Amoussouvi
"Single cell fluorescence imaging with RNA-FISH allows for quantitative characterization of transcriptional regulation during cell cycle in S. cerevisiea"

10 April 2014
Jens Hahn
"Fluorescence anisotropy to study molecular orientations in lipid membranes"

03 April 2014
Clemens Kühn
"Resuscitation of Mycobacteria - Cellnumbers and Oscillations"

27 March 2014
Friedemann Uschner
"How scaffolding influences fidelity in signal transduction"

20 March 2014
Matthias Reis
"Analysis of single photon data for confocal microscopy of live cells"

13 March 2014
Sayaka Mizutani
"Boolean network model in PI3K and MAPK pathways and the effects of combinatorial drug therapy for cancer"

06 March 2014
Magdalena Rother
"Enhanced generation of MAPK rule based code from rxncon"

27 Feb. 2014
Timo Lubitz
"Parameter balancing in kinetic models"

20 Feb. 2014
Katja Tummler
"Dynamic mathematical modeling explores the metabolic flexibility of mycobacteria"

13 Feb. 2014
Wolfgang Giese
"Modeling yeast morphology"

06 Feb. 2014
Dirk Brockmann
"The hidden geometry of complex, network-driven contagion phenomena"

30 Jan. 2014
Max Flöttmann and Thomas Spießer
"MCA hooray - a webapp for advanced sensitivity analysis"

28 Jan. 2014 - 14:30, after group meeting
Dinto Jose
"Study of cross-talk in the NF-kB pathway using a regulatory network model"

16 Jan. 2014
Ulrike Münzer
"Annotation of a MAPK network"

09 Jan. 2014
Edda Klipp
"Ion fluxes"

2013

19 Dec. 2013
David Jesinghaus
"rxncon 2.0"

12 Dec. 2013
Sebastian Thieme
"Generating state transition diagrams from reaction-contingency based network description"

05 Dec. 2013
Max Flöttmann and Max Schelker
"Spatial modeling of the influenza A virus entry"

28 Nov. 2013
Friedemann Uschner
"Anonymous feedbacks in the Hog1-pathway"

26 Nov. 2013
Sohiya Yotsukura
"Biomarker’s role in the early detection of clinically significant cancer — properly quantified?"

21 Nov. 2013
Thomas Spießer
"SBML-Pedigre: A web-based framework for modeling yeast populations with SBML models"

14 Nov. 2013
Stephan Adler
"A modeling approach to analyse the structure of alpha arrested yeast cultures"

07 Nov. 2013
Matthias Reis
"Analysis of single photon data for confocal microscopy of live cells"

31 Oct. 2013
Magdalener Rother
"Reactions and contingencies"

24 Oct. 2013
Till Scharp
"A python class for extended metabolic control analysis including time-dependent sensitivity/response coefficients"

17 Oct. 2013
Björn Goldenbogen
"Probing the cell wall elasticity using Atomic Force Microscopy. A progress report"

26 Sep. 2013
Claudia Beck
"Parameter estimation of a stochastic model using the method of moments"
Maximiliano Ancina Möller
"Minimal models for cell-cycle control based on competitive inhibition and multisite phosphorylations of Cdk substrates"

12 Sep. 2013
Clemens Kühn
"Reaeration Dynamics of Mycobacterium Tuberculosis"

01 Aug. 2013
Jannis Uhlendorf
"Real-time control of gene expression in in S. cerevisiae"

25 July 2013
Jens Hahn
"SBtab - a unifying spread sheet format"

18 July 2013
Friedemann Uschner
"Characterizing signal transduction in S. cerevisiae osmo-sensing"

11 July 2013
Falko Krause
"A Hypothesis for the Cytosolic Calcium Release as response to Alkaline Stress in Yeast ˜ A Drama in 3 Acts"

04 July 2013
Julia Katharina Schlichting
"Syntetic analog computation in living cells"

20 June 2013
Benedikt Dänekamp
"A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis"

13 June 2013
Anke Vollertsen
"A Functional Genomics Strategy that uses Metabolome Data to Reveal the Phenotype of Silent Mutations"

06 June 2013
Wolfgang Giese
"How to make use of imaging in spatial modeling?"

30 May 2013
Sebastian Thieme
"Mathematical Model Reduction based on rxncon definition"

23 May 2013
Ulrike Münzner
"Whi5 and what makes a cell divide"

16 May 2013
Max Flöttmann
"A stochastic spatial model of the beginning of influenza A infection"

02 May 2013
Samuel Drulhe
"Data, tools and methods used in computational and systems biology"

25 Apr. 2013
Stefan Homann
"Snfi1 pathway regulation"

18 Apr. 2013
Orianne Mazemondet
"Trehalose and glycogen during yeast osmotic stress"

11 Apr. 2013
Katharina Albers
"Systems Biology for the elucidation of pesticide mode of action"

04 Apr. 2013
Björn Goldenbogen
"Let It Flow — A Microfluidic device for single cell analysis of S. cerevisiae"

28 March 2013
Internal meeting:
"Whole cell model"

21 March 2013
Henrik Cordes
"E. coli on Low Carb Diet: Implementing synthetic metabolic pathways for growth and production"

07 March 2013
Fabio Baldissera
"A Control Theory Approach to Intervene in Biological Networks"

28 Feb. 2013
Tomoya Mori
"A probabilistic Boolean modeling based on reactions and contingencies"

21 Feb. 2013
Clemens Kühn
"Modeling Cell Cycle of Mycobacterium Tuberculosis"

14 Feb. 2013
Friedemann Uschner
"Characterizing the transduction of a signal - A systems health check"

07 Feb. 2013
Matthias Reis
"The problem of absolute protein quantification in fluorescence microscopy"

31 Jan. 2013
Wolfgang Giese and S. Westerheide
"Modeling cell polarization in budding yeast and a finite element approach to simulate membrane-cytosol interactions"

24 Jan. 2013
Thomas Handorf
"A Boolean model of cancer signaling"

17 Jan. 2013
Samuel Drulhe
"FLISELab: a tool for ion fluxes measurement"

10 Jan. 2013
Fabian Bindel
"C-myc and its influence on the central carbon metabolism"

2012

13 Dec. 2012
Axel Kowald and François Guillaud
"Ageing, mitochondria and ROS: the GerontoMitoSys project"

11 Dec. 2012
Aouefa Amoussauvi and Claudia Beck
"Translational and transcriptional dynamics of G1/S transition regulating genes in S.cerevisiae - An experimental and theoretical single cell study"

03 Dec. 12 - 12:30
Thomas Rattei, Vienna University
"Bacterial protein secretion - Key factor in host-pathogen interactions"

29 Nov. 2012
Marvin Schulz
"Systems biology methods in the identification of potential drug targets"

22 Nov. 2012
Katja Tummler
"Ideas on model integration in metabolic studies"

15 Nov. 2012
Till Scharp
"CellNetOptimizer: From prior knowledge to predictive models in early reprogramming"

08 Nov. 2012
Katja Tummler, Orianne Mazemondet, and Friedemann Uschner
"Exploring the legendary secrets of the "(Un)-Parametrized Treasures" - The stunning tales of the adventurous DREAM-Team"

01 Nov. 2012
Stephan Adler
"A modeling approach to explore G1 specificy in diverse cultures of S. cerevisiae"

30 Oct. 2012
Rodrigo Baltanás
"Pheromone-induced morphogenesis activates the yeast HOG MAPK pathway improving osmoadaptation capacity"
read more ...

25 Oct. 2012
Judith Wodke
"Organization and Integration of Large-scale Datasets for Designing a Metabolic Model and Re-annotating the Genome of Mycoplasma pneumoniae"

18 Oct. 2012
Marcus Krantz
"Using the rxncon framework for iterative network definition, visualisation and modelling"

04 Oct. 2012
Alexander Hoffmann
"A dynamical code to specify immune responses"

18 Sept. 2012 - after our group meeting
Tracy Johnson
"A histone “tail”: Unexpected mechanisms of co-transcriptional RNA splicing"

13 Sept. 2012 - 13:30
Matthias Bock - Defense of Master thesis
"Mitophagy in yeast, an autophagic process of intracellular organelle quality control"

02 Aug. 2012
Abel Vertesy
"Pombe pheromone response"

26 July 2012
Falko Krause
"biographer.grid - A new layout algorithm for biochemical reaction network visualizations"
Ercan Kukroglu
"Bayesian Data Analysis: Numerical Methods, Markov Chain Monte Carlo et al."

19 July 2012
Katharina Albers
"How to defeat a Cereal Killer - finding drug targets in Magnaporthe grisea"

19 July 2012 - 15:00
Henrike Zschach - Defense of Bachelor thesis
"Dekodierung von Kalzium-Spike-Sequenzen"

12 July 2012
Friedemann Uschner
"Loud is the new Quiet: Noise and Information Transmission"

05 July 2012
Orianne Mazemondet
"Sweeter when stressed-out: yeast glycolysis during osmotic stress"

28 June 2012
François Guillaud
"Modelling the effects of ageing on the respiratory chain"

21 June 2012
Marvin Schulz
"Identifying drugs in optimal treatments"

14 June 2012
Marcus Krantz
"The rxncon project"

07 June 2012
Wolfgang Giese
"Modeling cell polarity in yeast"

31 May 2012
Thomas Handorf
"Modeling cancer signaling"

24 May 2012
Max Schelker
"Input estimation in dynamical systems & Epo-induced signaling in hematopoietic and tumor context"

10 May 2012
Matthias Reis
"Regulation of the yeast cell cycle studied by high-throughput microscopy"

03 May 2012
Adriana Supady - Defense of Master thesis
"Mathematical modeling of synthetic logic gates in S. cerevisiae"

26 Apr. 2012
Matthias Bock
"biographer simulator - An easy tool for interactive model simulation"

Attention: new date: April 19, 2012
(12 Apr. 2012)
Kararzyna Tyc
"A game theoretical approach to study host-pathogen interactions"

05 Apr. 2012
Till Scharp
"A stochastic model of epigenetic dynamics in somatic cell reprogramming"

29 March 2012
Samuel Drulhe
"Thermodynamical modeling of transmembrane cation fluxes in yeast"

22 March 2012
Clemens Kühn
"Modeling cell cycle and growth of Mycobacterium tuberculosis"

15 March 2012
Margit Heiske
"Modelling the oxidative phosphorylation: hypoxia and supercomplexes"

08 March 2012
Arturo Blázquez Navarro
"ODE Models and Drug Target Search: The example of TGF-Beta"

01 March 2012
Friedemann Uschner
"Information Theory and Biology"

14 Feb. 2012 - following the group meeting (Invalidenstr. 42, Großer Seminarraum)
André Dautcourt
"Modeling ROS production by respiratory chain complex I"

02 Feb. 2012
Uwe Benary (MDC)
"Mathematical modelling suggests different functions of beta-TrCP isoforms in Wnt/beta-catenin signalling"

17 Jan. 2012 - following the group meeting (Invalidenstr. 42, Großer Seminarraum)
Christian Diener
"Non-invasive quantification of extracellular communication in live yeast"

12 Jan. 2012
François Guillaud
"From respiratory chain to ageing: the production of ROS"

05 Jan. 2012
Judith Wodke
"A constraint-based metabolic model for M. pneumoniae - Final results"

2011

15 Dec. 2011
Thomas Spießer
"Exploring mechanisms of size control and genomic duplication in Saccharomyces cerevisiae"

08 Dec. 2011
Matteo Barberis
"An unexpected mechanism controlling chromatin silencing in yeast"

01 Dec. 2011
Marcus Krantz
"State transformation for automatic model reduction"

24 Nov. 2011
Katja Tummler
"Modelling of the Central Carbon Metabolism of Mycobacterium Tuberculosis"

17 Nov. 2011
Till Scharp
"Motif Discovery in Pluripotency Related Boolean Networks"

10 Nov. 2011
Falko Krause, Thomas Handorf, Marvin Schulz
"Network Visualization: Google Summer of Code Results"

03 Nov. 2011
Jens Hahn
"Arsenate replacing phosphate in yeast glycolysis"

20 Oct. 2011
Clemens Kühn
"Modeling of the mycobacterial cell cycle"

13 Oct. 2011
Max Flöttmann
"Analysis of proteome data of virus and host in influenza infection"

06 Oct. 2011
Samuel Drulhe
"Cation homeostasis"

29 Sept. 2011
Katarzyna Tyc
"Modeling C. albicans interactions with its human host"

22 Sept. 2011
Christian Waltermann
"Which factors are connected to dosage sensitivity in the budding yeast signaling system?"

15 Sept. 2011
Matthias Reis
"Phycobilisome diffusion in cyanobacteria investigated by Fluorescence Lifetime Imaging Microscopy"

28 July 2011
Margit Heiske
"Modeling the respiratory chain"

08 July 11 - 15:00
Tatsuyo Shibata, Laboratories for Physical Biology, RIKEN Center for Developmental Biology,
Kobe (Japan)
"Inherent polarity and gradient sensing of the self-organized signaling system in chemotactic cells"

07 July 2011
József Bruck
"Hierarchic analysis revisited - (finite) Flux Difference Analysis applied to glycolytic enzymes"

05 July 2011 - 15:00
Wolfgang Giese
"Spatial sensing of mating pheromone gradients by Saccharomyces cerevisiae"

04 July 2011 - 17:00 (Invalidenstr. 42, Kleiner Seminarraum)
Associate Professor James Faeder, University of Pittsburgh
"Simulation methods for rule-based models of biochemical networks"

30 June 2011
Falko Krause, Marcus Krantz
"yeastmap - A software tool for mapping and modeling of large scale biological networks"

23 June 2011
Christian Waltermann
"An approach to information theoretical analysis of the High Osmolarity Glycerol (HOG) pathway in yeast"

16 June 2011
Marvin Schulz
"Identification of Potential Drug Targets in Kinetic Models: From Experimental Data to Drug Candidates"

09 June 2011
Martina Fröhlich
"Mathematical models of the regulation of membrane transport"

26 May 2011
Thomas Spießer
"Size homeostasis is an emergent property of growing and dividing yeast cells"

19 May 2011
Orianne Mazemondet
"Spatio-temporal dynamics of the Wnt/beta-catenin signaling pathway"

18 May 2011 - 17:00 (Chausseestr. 117, room 551, 5th floor)
Dr. Alejandro Colman-Lerner (Universidad de Buenos Aires)
"Mechanisms that regulate cell fate determination"

10 May 2011 - 14:30
Dr. François Guillaud
"Modelling the complex III ROS production: 2 quinones at the Qo site ? - Model enhancements"

29 Apr. 2011 - 10:00
Dr. Roger Brent
"Signal and signal variation in single cells"

28 Apr. 2011
Dr. Szymon Stoma
"Kinetic model verification in Systems Biology"

21 Apr. 2011
Max Flöttmann
"Methods for modelling the core gene regulatory network of pluripotency"

17 March 2011
Gady Goldsobel
"How do multiple pathway branches team up in the yeast osmoadaptation? A modeling approch"

10 March 2011
Dr. Clemens Kühn and Helena Steinocher
"Modeling of cell cycle in Mycobacterium tuberculosis - introduction, first results, future perspectives"

04 March 2011 - 14:00 (Invalidenstr. 43, Seminarraum ITB)
Natalie Stanford
"Developing a minimal data approach to large-scale kinetic model construction in Sacchromyces cerevisiae"

24 Feb. 2011
Katarzyna Tyc
"Modelling of heat shock response in Candida albicans"

23 Feb. 11 - 17:15 (Chausseestr. 117, Hörsaal 523)
Prof. Hiroshi Mamitsuka
"PathRanker: Mining metabolic network through gene expression"

17 Feb. 2011
Dr. Szymon Stoma
"Analyzing intracellular gradients - Spatio-Temporal Simulation Environment (STSE) study case"

15 Feb. 2011
Christian Diener

10 Feb. 2011
Martina Fröhlich
"The basic thermodynamic model of cation homeostasis of Saccharomyces cerevisiae - confronted with experimental data"

01 Feb. 2011
Judith Wodke
"Metabolic modeling of Mycoplasma pneumoniae - state of the art"

27 Jan. 2011
Christian Waltermann

06 Jan. 2011
Adriana Supady
"Efficient replication in S.cerevisiae requires an altering fork rate for short chromosomes"

06 Jan. 2011
Dr. Matteo Barberis
"Forkhead TFs control timing of mitotic cyclins expression in cell cycle regulation"

2010

21 Dec. 2010
Till Scharp
"Networks and modeling or reprogramming: The SMBioNet method"

9 Dec. 2010
Dr. Thomas Handorf
"Complex Networks in Cancer Signaling"

25 Nov. 2010
Thomas Spiesser
"Size regulation is an intrinsic property of growing yeast cells"

18 Nov. 2010
Dr. Marcus Krantz
"Mapping signal transduction networks - A framework for compilation and visualisation of high quality knowledge compatible with mathematical modelling"

11 Nov. 2010
Falco Krause, Marvin Schulz,Thimo Lubitz, Dr. Wolfram Liebermeister
"Live demonstration of semanticSBML 2.0"

04 Nov. 2010
Wolfgang Giese
"A spatial model for intercellular communication of yeast using partial differential equations"

02 Nov. 2010
Uwe Benary
"Mathematical Modelling of the Wnt/beta-catenin Pathway and its Crosstalk to NF-kappaB Signalling"

28 Oct. 2010
Prof. Markus J. Tamàs
"Molecular biology of arsenic tolerance in yeast"

21 Oct. 2010
Carl-Frederik Tiger
"Yeast MAP-Kinase signalling"

28 Sept. 2010
Falko Krause

23 Sept. 2010
Dr. François Guillaud
"Modelling of the endocrine renin-angiotensin system and more"

09 Sept. 2010
Dr. Samuel Drulhe
"Exploration of transcriptional regulatory networks in Bacillus subtilis with omics data"

09 July 2010
Dr. Michal K. Stachowiak, (Associate Professor Pathology and Anatomical Sciences,University at Buffalo)
"Novel Integrative Nuclear Signaling Module for Neuronal Development and Regenerative Medicine"

08 July 2010
Dr. Matteo Barberis
"Investigation of PPIs in the Budding Yeast Cell Cycle by Fluorescence-Based Microscopy"

01 July 2010
Prof. Gabriel del Rio
"To be (a program) or not to be"

29 June 2010
Calle Tiger
"Yeast MAPK signalling"

10 June 2010
Erkan Engin Kuruoglu
"Bayesian Signal Processing: a tutorial and case study"

08 June 2010
Hayssam Soueidan
"Discrete Event Modeling and Analysis for Systems Biology Models"

06 May 2010
Dr. Matteo Barberis
"Systems Biology of Cell Cycle Regulation and Link to Neurodegenerative Disorders"

29 Apr. 2010
Dr. Marta Hoffman-Sommer
"Kinetic modeling of an artificial cellular logic-gates system"

27 Apr. 2010
Susanne Kummer
"Detection of influenza H1N1 mRNA in single living infected MDCK cells using fluorescent FIT-PNAs as single labelled high-breedization probes"

22 Apr. 2010
Falko Krause
"Bioinformatics for Systems Biology: Web Services, Annotations, Similarity, Storage, Simulation"

15 Apr. 2010
Judith Wodke
"Modeling Mycoplasma pneumoniae Metabolism"

01 Apr. 2010
Clemens Kühn
"To maintain vital functions in times of crisis. A different view on osmoadaptation"

11 March 2010
Christian Waltermann
"Signalling in yeast"

25 Feb. 2010
Christian Diener
"Patience vs. Accuracy: Gradient Sensing in Budding Yeast"

18 Feb. 2010
Nadine Töpfer
"Optimization of enzyme profile in metabolic pathways"

11 Feb. 2010
Axel Kowald
"Biology and Modelling of the Aging Process. An Overview"

28 Jan. 2010
Thomas Handorf
"NetworkCurator: A tool for the curation of complex signaling networks"

21 Jan. 2010
Bente Kofahl
"Mathematical modelling of non-canonical NF-kappaB-signalling"

07 Jan. 2010
Katharina Baum
"Mechanisms underlying the robustness of cellular oscillations"

2009

17 Dec. 2009
Jozsef Bruch
"Lost in translation - but how much? A story of predicting fluxes from transcription data in yeast glycolysis"

10 Dec. 2009
Dr.Matteo Barberis
"A Systems Biology Investigation of Cell Cycle Regulation in Budding Yeast"

26 Nov. 2009
Marvin Schulz
"Annotation based clustering of functionally related models"

19 Nov. 2009
Dr. Szymon Stoma
"STSE: a microscopy image driven spatial simulation enviroment"

12 Nov. 2009
Susanne Gerber
"Computational analysis of microarray data: The impact of metallic salt stress on S. cerevisiae"

05 Nov. 2009
Martina Fröhlich
"Analyzing AQP2 trafficking with time dependent sensitivity analysis"

29 Oct. 2009
Katarzyna Tyc
"What is Candida albicans?"

22 Oct. 2009
Dr. Gabriele Schreiber
"Principles of flim-FRET for measuring protein interactions and the problems with yeast cells"

15 Oct. 2009
Jian Li
"An online phenological database covering 20th in Germany: analysis and tool"

08 Oct. 2009
Dr. Wolfram Liebermeister
"Methods for model construction and data integration in metabolic modelling"

01 Oct. 2009 - 10:00
Dr. Gabriel Del Rio Guerra
"Towards a novel Systems Biology approach for drug design"

24 Sept. 2009
Dr. Simon Borger
"Does the proton pump drive potassium uptake in yeast?"

17 Sept. 2009
Clemens Kühn
"Data Aquisition and Modeling of Osmoadaptation in Yeast"

10 Sept. 2009
Dr. Jörg Schaber
"Arsenite response in yeast"

23 July 2009
Gunnar Cedersund
"Sound usage of modelling despite over-parametrisation in the study of type 2 diabetes"

16 July 2009
Till Scharp und Max Flöttmann
"A computational model for understanding stem cell, trophectoderm and endoderm lineage determination"

09 July 2009
Gady Goldsobel
"On the 'Extinctions in heterogeneous environments and the evolution of modularity'"

02 July 2009
Matthias Bock
"Negative feedback that improves information transmission in yeast signalling"

25 June 2009
Dr. Thomas Handorf
"On the ColoNet project"

18 June 2009
Falko Krause
"Towards understanding yeast cation homeostasis: Which signals lead to the expression of the ENA ATPase Transporter?"

11 June 2009
Willi Gottstein

04 June 2009
Dr. Jörg Schaber
"Water potentials and signalling in yeast"

28 May 2009
Clemens Kühn
"Systematic investigation of osmoadaptation in yeast"

19 May 2009
Thomas Spiesser
"Is DNA Replication Rate Independent of Sequence Composition or Length in Budding Yeast?"

14 May 2009
Wai-Cheung Ng
"Mathematical modelling of the regulation of osmotic pressure in Saccharomyces Cerevisiae"

07 May 2009
József Bruck
"A data based yeast glycolysis model and its newest adventures"

30 Apr. 2009
Jannis Uhlendorf
"Prediction of optimal enzymatic regulation achitectures"

23 Apr. 2009
Dr. Zhike Zi
"Decoding the nature of Hog1 response to pulse osmotic stress"

16 Apr. 2009
Avidan Neumann, Israel
"A Paradigm Shift in Understanding Resistance Evolution Patterns with a Multi-Level Viral Dynamics Model Incorporating Intra-Cellular Replication"

09 Apr. 2009
Marvin Schulz
"Finding optimal drug targets in kinetic network models"

02 Apr. 2009
Christian Waltermann
"Robustness and fragility in signalling pathways in yeast"

19 March 2009
Szymon Stoma
"Modelling development of shoot apical meristem of Arabidopsis"

12 March 2009
Alexander Skupin

12 Feb. 2009
Marta Hoffman-Sommer
"TBA (Crosstalk between signaling pathways)"

29 Jan. 2009
Wolfram Liebermeister
"TBA (Parameter determination for metabolic models)"

22 Jan. 2009
Volker Ißbrücker
"Flux Balance Analysis"
Matteo Barberis
"Yeast Cell Cycle Modeling"

08 Jan. 2009
Christian Diener
"Signal Filtering by Membrane-based Dimerization"

2008

11 Dec. 2008
Hendrik Hache
"Reverse Engineering of Gene Regulatory Networks"

20 Nov. 2008
Martina Fröhlich
"Mathematical Modeling of Aquaporin-2 Trafficking and Regulation"

13 Nov. 2008
Kevin Thurley
"Nucleation of Ca(2+) Channel Clusters - a New Approach in Modelling Spatially Resolved Biological Systems"

06 Nov. 2008
Sergio Grimbs
"Metabolic network modelling with incomplete kinetic information"

30 Oct. 2008
Thomas Schendel
"Calcium dynamics in heart cells - model approaches"

23 Oct. 2008
Moritz Krog
"Modeling the Snf1-Pathway: A systems biology approach to glucose signaling in yeast"

16 Oct. 2008
Zhike Zi
"Mathematical modeling and kinetic analysis of cellular signaling pathways"

13 March 2008
Anastasia Lavrova (HUB, Institut für Physik)
"Dynamical behavior of distributed biochemical system (glycolysis)"

31 Jan. 2008
Jörn Schmiedel
"Stability analysis of glycolysis"

24 Jan. 2008
Michael Rempel (MPI für Dynamik komplexer technischer Systeme, Magdeburg)
"Model composition"

17 Jan. 2008
Nadine Töpfer
"Yeast glycolytic oscillations: a new definition of oscillophore strength"
Victor Greiff
"How gene order is influenced by the biophysics of transcription"

10 Jan. 2008
Thomas Schendel (HU, Institut für Physik)
"Stochastics in spatio-temporal dynamics of pH and membrane potential in algae cells"


Materials      Summer semester - 2017

18 April - 22 July 2017

Theoretische Biophysik

Materials      Winter semester - 2016/2017

17 Oct. 2016 - 18 Feb. 2017

Quantenmechanik