Theses

PhD theses

József Bruck (2012)
On the regulation of central carbon metabolism in S. cerevisiae

Christian Diener (2012)
"Localized signaling and communication in budding yeast"

Martina Fröhlich (2012)
Computational and experimental investigation of the mechanisms involved in cellular water transport and (cat)ion homeostasis

Margit Heiske (2012)
"Modeling the respiratory chain and the oxidative phosphorylation"

Marvin Schulz (2012)
"Systems biology methods in the identification of potential drug targets"

Katarzyna Tyc (2012)
A modeling perspective on Candida albicans interactions with ist human host

Judith Wodke (2012)
Organization and Integration of Large-scale Datasets for Designing a Metabolic Model and Re-annotating the Genome of Mycoplasma pneumoniae

Susanne Gerber (2011)
In silico modeling of cation homeostasis in Saccharomyces cerevisiae

Clemens Kühn (2010)
Modeling and analysis of yeast osmoadaptation in cellular context

Marija Cvijovic (2009)
Mathematical model of accumulation of damaged proteins and its impact on ageing

Hendrik Hache (2009)
Computational analysis of gene regulatory networks

Jana Schütze (2009)
Synchronisation und räumliche Ausbreitung von glykolytischen Oszillationen

Simon Borger (2008)
Parametrising kinetic models of biological networks

Thomas Handorf (2008)
The synthesizing capacity of metabolic networks

Jürgen Pahle (2008)
Stochastic simulation and analysis of biochemical networks

Zhike Zi (2008)
Mathematical modeling and kinetic analysis of cellular signaling pathways

Wolfram Liebermeister (2003)
Analysis of optimal differential gene expression

Diploma theses

Katja Tummler (2012)
Dynamic modeling of the central carbon metabolism of Mycobacterium tuberculosis

Wolfgang Giese (2011)
Numerische Behandlung einer linearen Reaktions-Diffusions-Gleichung mit einer Anwendung in der interzellulären Kommunikation bei Hefezellen
October 2011 - For his diploma thesis Wolfgang Giese was awarded the "Humboldt-Preis"

Till Scharp (2010)
Mathematical modeling of stem cell reprogramming

Nadine Töpfer (2010)
Optimisation of enzym profiles in metabolic pathways

Ludwig Weh (2010)
Analysis of elementary networks and topological motifs in the cell cycle

Margit Heiske (2008)
Modelling of the respiratory chain

Moritz Krog (2008)
A systems biology approach to mathematical modelling of the Snf1 glucose sensing pathway in Saccharomyces cerevisiae

Anselm Helbig (2006)
Modelling the Tor pathway in Saccharomyces cerevisiae

Bente Kofahl (2004)
Mathematische Modellierung von Signaltransduktionswegen in Hefe Saccharomyces cerevisiae

Heike Aßmus (2001)
An approach to network-based selectivity of anti-parasitic inhibitors

Roland Krüger (2001)
Modellierung der Signaltransduktion infolge von hyperosmotischem Stress in Hefezellen

Master theses

Matthias Bock (2012)
Mitophagy in yeast, an autophagic process of intracellular organelle quality control

Gady Goldsobel (2012)
Computational modelling and analysis of the baker’s yeast multi-branch HOG pathway

Adriana Supady (2012)
Mathematical modeling of synthetic logic gates in S. cerevisiae

Ábel Vértesy (2012)

Timo Lubitz (2010)
Parameter balancing in kinetic models

Jian Li (2009)
Creation of an online phenological database of the 20th century in Germany for analysis and prediction of global change issues

Wai-Cheung Ng (2009)
Mathematical modeling of the regulation of osmotic pressure in Saccharomyces cerevisiae

Jannis Uhlendorf (2009)
Prediction of optimal enzymatic regulation architectures

Max Flöttmann (2008)
Automated model generation for osmoregulation in Saccharomyces cerevisiae with ModelMaGe

Falko Krause (2008)
semanticSBML a tool for creating, checking, annotating and merging of SBML documents

Thomas Spiesser (2008)
Modeling DNA replication in Saccharomyces cerevisiae

Clemens Kühn (2006)
Mathematical modeling of a sea urchin rene regulatory network

Judith Wodke (2006)
Qualitative modelling of the human cell cycle

Sebastian Schmeier (2005)
Automated recognition and extraction of entities related to enzyme kinetics from text

Bachelor theses

Stephan Adler (2012)
Single Cell and Population Modeling of the G1 network to explore growth, division and structural aspects in diverse budding yeast cultures

Jens Hahn (2012)
Arsenate replacing phosphate in yeast glycolysis

Helena Steinocher (2011)
Mathematische Modellierung der Replikationsinitiation in Mycobacterium Tuberculosis

Martin Weiland (2011)
Modellierung und Simulation der mitogen-aktivierten Protein-Kinasen-Kaskade zur Untersuchung des Feedbacks der Phosphatase der 3. Stufe auf die aktivierte Kinase der 1. Stufe der Kaskade

Claudia Beck (2010)
Stochasic modelling of the G1/S transition in the S. cerevisiae cell cycle

Felix Noeske (2010)
Modellierung der Ausbildung des OXPHOS Superkomplexes

Sebastian Ullrich (2010)
Modellierung des mitochondrialen Superoxidabbaus in Podospera anserina

Chang Yan (2010)
Auswirkung von Konzentrationsänderungen bindender Proteine auf die Komplexbildung

Anna Kosenko (2009)
Combination of mathematical models of signaling pathways

Adriana Supady (2009)
Theoretical and computational analysis of negative feedback mechanisms and the dose-response alignment in the pheromone signalling pathway of the yeast Saccharomyces cerevisiae

Kai Kruse (2008)
Vergleich der Synthesekapazitätsanalyse von Fluss-Balance-Analyse und Network Expansion

Christian Diener (2007)
Spatiotemporal simulations for the pheromone signaling pathway in MATa cells of Saccharomyces cerevisiae

Marvin Schulz (2006)
Dimension reduction of biochemical network models: implementation and comparison of different algorithms

Jannis Uhlendorf (2006)
Development of a mathematical model for the occupancy of mRNA with ribosomes in Saccharomyces cerevisiae

Christof Daniel Robert Dehmel (2004)
Exakte stochastische Simulation der Genexpression bei hyperosmotischen Schockzuständen in Saccharomyces cerevisiae

Stephan Menz (2004)
Vergleich einer deterministischen und stochastischen Modellierung des Hog Signalweges von S. cerevisiae zur Simulation eines hyperosmotischen Schocks

Susanne Gerber (2004)
Theoretische Untersuchung zur Wirkung von Inhibitoren in Abhängigkeit von ihrem Angriffsort im metabolischen Netzwerk und ihrem Typ

Sebastian Schmeier (2003)
Klassifizierung von biochemischen Texten mittels statistischer Lernverfahren

Student project theses

David G. R. Jesinghaus (2012)
From rule-based to contingency-based modelling using the example of a yeast MAP kinase pathway

Bente Kofahl (2003)
Modellierung des Pheromon-Signalweges in Hefezellen Saccharomyces cerevisiae

Dorothea Busse (2000)
Zeithierarchie in optimierten linearen metabolischen Systemen

Michael Rempel (2000)
Modellierung der Signaltransduktion