Databases, Programs and Tools |
| Biological Software |
Softwarelinks at the Institut Pasteur |
| BLAST-N |
DNA alignments |
| BLAST-P |
Protein alignments |
| ClustalW2 |
Multiple Sequence Alignment |
| Dali Server |
Comparing protein structures in 3D |
| EBI Services |
Services of the European Bioinformatics Institute |
| EDS |
Electron Density Server at Uppsala University |
| Expasy |
Expert Protein Analysis System |
| I-TASSER |
Protein Structure and Function Predictions |
| NCBI |
National Center for
Biotechnology Information |
| NEB cutter V2.0 |
ORF and resiction enzyme cutting site identification |
| PDB |
Protein Data Bank (experimentally-determined structures of proteins) |
| pDRAW32 |
DNA analysis software |
| PEDANT 3 database |
Protein Extraction, Description and Analysis Tool |
| Pfam |
Protein families database of alignments and HMMs |
| Prosite |
Database of Protein families and Domains |
| ProtParam |
computation of various physical and chemical parameters for a given protein |
| PubMed |
U.S. National Library of Medicine
|
| SignalP 3.0 Server |
Prediction of presence and location of signal peptide cleavage sites |
| TMHMM Server v. 2.0 |
Prediction of transmembrane helices in proteins |
| TOPCONS |
Consensus prediction of membrane protein topology |
| WebLogo |
Create Sequence Logos |
| Zdock |
Fast Fourier Transform based protein docking program |
| Updated 12.12.2013 |
